Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0267 ATGGGAGACAGCGCGCGTGGTTTGCTCCCTCCCGGTATCCGGTTCTTACCCTCCGAAGAGCTTCTCCTCGGCCATTACTTAACCAACAAGAACCACAACCGGGAGGGGGGTTTCAACGGTTCTGATTTGATCAAGGAACTGGACCTATACGATCACCACCCCTTCGAATTACCGGACGCTGCGTGCTTTTCGTACGGTTACCAAGGGAGGAAGAGGCATTGGTTCTGTTACACTGCTAAGAAAGACATGAAACGCCGAAGCAGGAAGGCGAAAAGCGGATTCTGGCTCCGAAAGGGAAGGGTTCTGGATATTCTCGGTAATGGTAACGCCGTTTTGGGCACGAGGACGCGTTTCGTTTTCTACGCCGGCAATTCCCTGAAAAACGCTACCAAAACGGATTGGATTTTGTACGAATACGCATTGCTTGACCGCCTTCTGGGTTCGTTCGTGCTTTGCCGTGTGGTGAATAAGCCTCCTCGAAAGAAGAGTCCGTCGGAGATTGGCCTCAGTTGTCTCGCTGATGAGAGCGCCTCGGCGGCGGTGCGTCACGTCGGTGTTCAGCATGATGGATGTATCGGAAGTGATGAGATCACTGAGAATCCAATTAGGTGTGGTGGTGAACATGATGATGGTGCTGCACCTGTTTCAAATGTTCAGGGAAGTCAGCAAGAAAGACTTTCAGGACTTCCCAGTGGCAGTGCACTGTTCATTGAAGCTGTGACGTCTCAGCAACATATACATTCCATTCTAGAGGAGGATTTCATAGAATTGaatgatattgtataa 786 0.4987 MGDSARGLLPPGIRFLPSEELLLGHYLTNKNHNREGGFNGSDLIKELDLYDHHPFELPDAACFSYGYQGRKRHWFCYTAKKDMKRRSRKAKSGFWLRKGRVLDILGNGNAVLGTRTRFVFYAGNSLKNATKTDWILYEYALLDRLLGSFVLCRVVNKPPRKKSPSEIGLSCLADESASAAVRHVGVQHDGCIGSDEITENPIRCGGEHDDGAAPVSNVQGSQQERLSGLPSGSALFIEAVTSQQHIHSILEEDFIELNDIV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0267 261 SUPERFAMILY NAC domain 8 157 IPR036093 GO:0003677|GO:0006355
Ssu5g0267 261 Pfam No apical meristem (NAM) protein 10 141 IPR003441 GO:0003677|GO:0006355
Ssu5g0267 261 PANTHER NAC DOMAIN-CONTAINING PROTEIN 21/22-LIKE ISOFORM X1 6 261 - -
Ssu5g0267 261 ProSiteProfiles NAC domain profile. 9 157 IPR003441 GO:0003677|GO:0006355
Ssu5g0267 261 Gene3D NAC domain 18 161 IPR036093 GO:0003677|GO:0006355
Ssu5g0267 261 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0267 Ssu-Chr5 5576854 5579096 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0267 1 164 NAC Transcription Factor Family AT1G71930 33.908 6.39e-22 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu5g0267 NAM 1.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0267 - - gmx:100785871 379.407