Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0263 ATGACTGCGAACAAAGAAAGGAGAACAATGATTTCGGCAATTTCATGGATACCGAAAGGGGCATCAAAATCAGAACCCTTTGTAGCGGATCCTCATTCCCAAAAGGATATTCAAGAATTTATAAACGTCGTGGATGAGCCGACGACATTAACAGTGGCAAATGACGCGGTATGTGACGACGTAACCCTTGCCTTGAAGGACCTCCACATGGAACATTACGATGATGAGGATGAAGaaCTCGAGTTATTCAGTTCGGGGACTGGTGATCTTTACTATCCAAGCAACGACGTGGATCCATATCtcaaagataaaaatAACTCGAAGACATGGTCATTTACCCAACCGATTCTGTCGTTGTTTGTGCGCGGAGCGAGGCGCTTAATGAGGAGGATAGTGACAATGAGGAGGGGGAGGATAGTGTCGGTCTTCTTGAGGTTTGGATACTCGAGGACAGAGAAACAAACATGTATCGTCATCATGAGATCGAAATTCCGGCACTTGCCACTTTGCACGGCTTGGCTTGATTGCCCCCTTCGAGGAGGAGAAAGAGGGAACTTCTTAGCTGTTGGTTCGATGGAACCTTCCATAGAAATTTGGAACCTTGATGTTGTTGAGGAGGTAAAGCCATGTGTGGTCTTGGGTGGCATTGATGAGGAAAAGAGGAAGGGAAAAATGAAATCAATCAAATACAAAGATGATGGTCACACTGACTCAGTACTTGGTCTTGCATGGAACAAGGAGTACaggaaTATACTTGCAAGTGCCAGTGCTGACAAGCGAGTAAAGATTTGGGATGTTGTCACTGGGAAGTGTGAAATTACAATGGAGCATCACTCGGACAAGGTTCAAGCAGTTGCTTGGAATCATCATGCACCGCAGGTTCTTCTTAGTGGTTCGTTTGATCATACTGTTGTCGTGAAGGATGGGAGGATGCCATCACATTCTGGCTATAAGTGGTCAGTCACAGCTGATGTAGAGAGCTTGGCATGGGATCCGCACAGTGAGCACTCTTTTGTGGTGAGTCTTGAAGATGGTATTGTTAAGTGTTTTGATGTTCGGACTATCAAGTCTGATTCCACATCCGAGCTCAGTTCTACTTTTACCCTACATGCACATGATGAAGCTGTTACATCAGTATCCTACAATCTGTCGGCACCTAATCTTCTTGCTACTGGATCCTTGGACAAGACGGTAAAGCTTTGGGATTTGTCGAACAACCAACCATCTTGTGTAGCATCTTATTTTCCGAAAATAGGGGCTATCTATTCTATTTCATTCTCAGAGGACAACCCCTTCTTGTTGGCTATAGGAGGCTCAAAGAAAAAATTGCGAgtATGGGACACCTTATCTGATTCTGGCATCTCTCAAAGATACGGTAACTACAAGTAA 1389 0.4406 MTANKERRTMISAISWIPKGASKSEPFVADPHSQKDIQEFINVVDEPTTLTVANDAVCDDVTLALKDLHMEHYDDEDEELELFSSGTGDLYYPSNDVDPYLKDKNNSKTWSFTQPILSLFVRGARRLMRRIVTMRRGRIVSVFLRFGYSRTEKQTCIVIMRSKFRHLPLCTAWLDCPLRGGERGNFLAVGSMEPSIEIWNLDVVEEVKPCVVLGGIDEEKRKGKMKSIKYKDDGHTDSVLGLAWNKEYRNILASASADKRVKIWDVVTGKCEITMEHHSDKVQAVAWNHHAPQVLLSGSFDHTVVVKDGRMPSHSGYKWSVTADVESLAWDPHSEHSFVVSLEDGIVKCFDVRTIKSDSTSELSSTFTLHAHDEAVTSVSYNLSAPNLLATGSLDKTVKLWDLSNNQPSCVASYFPKIGAIYSISFSEDNPFLLAIGGSKKKLRVWDTLSDSGISQRYGNYK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0263 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 369 411 IPR001680 GO:0005515
Ssu5g0263 462 Gene3D - 4 314 IPR015943 GO:0005515
Ssu5g0263 462 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 369 407 - -
Ssu5g0263 462 Pfam Anaphase-promoting complex subunit 4 WD40 domain 231 289 IPR024977 -
Ssu5g0263 462 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Ssu5g0263 462 PRINTS G protein beta WD-40 repeat signature 252 266 IPR020472 -
Ssu5g0263 462 PRINTS G protein beta WD-40 repeat signature 389 403 IPR020472 -
Ssu5g0263 462 Pfam WD domain, G-beta repeat 367 402 IPR001680 GO:0005515
Ssu5g0263 462 Pfam WD domain, G-beta repeat 420 447 IPR001680 GO:0005515
Ssu5g0263 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 274 IPR001680 GO:0005515
Ssu5g0263 462 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 10 460 IPR044285 GO:0006364
Ssu5g0263 462 SMART WD40_4 362 402 IPR001680 GO:0005515
Ssu5g0263 462 SMART WD40_4 225 265 IPR001680 GO:0005515
Ssu5g0263 462 SMART WD40_4 407 447 IPR001680 GO:0005515
Ssu5g0263 462 SMART WD40_4 268 308 IPR001680 GO:0005515
Ssu5g0263 462 SMART WD40_4 312 351 IPR001680 GO:0005515
Ssu5g0263 462 ProSitePatterns Trp-Asp (WD) repeats signature. 252 266 IPR019775 -
Ssu5g0263 462 SUPERFAMILY WD40 repeat-like 184 449 IPR036322 GO:0005515
Ssu5g0263 462 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 10 460 - -
Ssu5g0263 462 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 232 270 - -
Ssu5g0263 462 ProSitePatterns Trp-Asp (WD) repeats signature. 389 403 IPR019775 -
Ssu5g0263 462 Gene3D - 315 457 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0263 Ssu-Chr5 5531201 5535880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0263 249 447 U-box Gene Family AT2G33340 26.923 4.33e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0263 K14791 - gmx:100800393 632.484