LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g0263	ATGACTGCGAACAAAGAAAGGAGAACAATGATTTCGGCAATTTCATGGATACCGAAAGGGGCATCAAAATCAGAACCCTTTGTAGCGGATCCTCATTCCCAAAAGGATATTCAAGAATTTATAAACGTCGTGGATGAGCCGACGACATTAACAGTGGCAAATGACGCGGTATGTGACGACGTAACCCTTGCCTTGAAGGACCTCCACATGGAACATTACGATGATGAGGATGAAGaaCTCGAGTTATTCAGTTCGGGGACTGGTGATCTTTACTATCCAAGCAACGACGTGGATCCATATCtcaaagataaaaatAACTCGAAGACATGGTCATTTACCCAACCGATTCTGTCGTTGTTTGTGCGCGGAGCGAGGCGCTTAATGAGGAGGATAGTGACAATGAGGAGGGGGAGGATAGTGTCGGTCTTCTTGAGGTTTGGATACTCGAGGACAGAGAAACAAACATGTATCGTCATCATGAGATCGAAATTCCGGCACTTGCCACTTTGCACGGCTTGGCTTGATTGCCCCCTTCGAGGAGGAGAAAGAGGGAACTTCTTAGCTGTTGGTTCGATGGAACCTTCCATAGAAATTTGGAACCTTGATGTTGTTGAGGAGGTAAAGCCATGTGTGGTCTTGGGTGGCATTGATGAGGAAAAGAGGAAGGGAAAAATGAAATCAATCAAATACAAAGATGATGGTCACACTGACTCAGTACTTGGTCTTGCATGGAACAAGGAGTACaggaaTATACTTGCAAGTGCCAGTGCTGACAAGCGAGTAAAGATTTGGGATGTTGTCACTGGGAAGTGTGAAATTACAATGGAGCATCACTCGGACAAGGTTCAAGCAGTTGCTTGGAATCATCATGCACCGCAGGTTCTTCTTAGTGGTTCGTTTGATCATACTGTTGTCGTGAAGGATGGGAGGATGCCATCACATTCTGGCTATAAGTGGTCAGTCACAGCTGATGTAGAGAGCTTGGCATGGGATCCGCACAGTGAGCACTCTTTTGTGGTGAGTCTTGAAGATGGTATTGTTAAGTGTTTTGATGTTCGGACTATCAAGTCTGATTCCACATCCGAGCTCAGTTCTACTTTTACCCTACATGCACATGATGAAGCTGTTACATCAGTATCCTACAATCTGTCGGCACCTAATCTTCTTGCTACTGGATCCTTGGACAAGACGGTAAAGCTTTGGGATTTGTCGAACAACCAACCATCTTGTGTAGCATCTTATTTTCCGAAAATAGGGGCTATCTATTCTATTTCATTCTCAGAGGACAACCCCTTCTTGTTGGCTATAGGAGGCTCAAAGAAAAAATTGCGAgtATGGGACACCTTATCTGATTCTGGCATCTCTCAAAGATACGGTAACTACAAGTAA	1389	0.4406	MTANKERRTMISAISWIPKGASKSEPFVADPHSQKDIQEFINVVDEPTTLTVANDAVCDDVTLALKDLHMEHYDDEDEELELFSSGTGDLYYPSNDVDPYLKDKNNSKTWSFTQPILSLFVRGARRLMRRIVTMRRGRIVSVFLRFGYSRTEKQTCIVIMRSKFRHLPLCTAWLDCPLRGGERGNFLAVGSMEPSIEIWNLDVVEEVKPCVVLGGIDEEKRKGKMKSIKYKDDGHTDSVLGLAWNKEYRNILASASADKRVKIWDVVTGKCEITMEHHSDKVQAVAWNHHAPQVLLSGSFDHTVVVKDGRMPSHSGYKWSVTADVESLAWDPHSEHSFVVSLEDGIVKCFDVRTIKSDSTSELSSTFTLHAHDEAVTSVSYNLSAPNLLATGSLDKTVKLWDLSNNQPSCVASYFPKIGAIYSISFSEDNPFLLAIGGSKKKLRVWDTLSDSGISQRYGNYK	462

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g0263	462	ProSiteProfiles	Trp-Asp (WD) repeats profile.	369	411	IPR001680	GO:0005515
	Ssu5g0263	462	Gene3D	-	4	314	IPR015943	GO:0005515
	Ssu5g0263	462	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	369	407	-	-
	Ssu5g0263	462	Pfam	Anaphase-promoting complex subunit 4 WD40 domain	231	289	IPR024977	-
	Ssu5g0263	462	PRINTS	G protein beta WD-40 repeat signature	434	448	IPR020472	-
	Ssu5g0263	462	PRINTS	G protein beta WD-40 repeat signature	252	266	IPR020472	-
	Ssu5g0263	462	PRINTS	G protein beta WD-40 repeat signature	389	403	IPR020472	-
	Ssu5g0263	462	Pfam	WD domain, G-beta repeat	367	402	IPR001680	GO:0005515
	Ssu5g0263	462	Pfam	WD domain, G-beta repeat	420	447	IPR001680	GO:0005515
	Ssu5g0263	462	ProSiteProfiles	Trp-Asp (WD) repeats profile.	232	274	IPR001680	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g0263	Ssu-Chr5	5531201	5535880	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g0263	249	447	U-box Gene Family	AT2G33340	26.923	4.33e-07	50.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g0263	K14791		-	gmx:100800393	632.484

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