Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0233 atgaaTTCACTAGTTCGCGATCTTGGAGACAAAGCCCTTCTTAGAAGGCTCCGACCAAATCCTAGCCATCGTGGACATCCTCTCGCCACTGACAAGTCTGTCAACAACCACCTTGACTGGTATGTCGTCCTCCAGCACTACCGCCTTACCATCCTCCTCCACCCCGACAAGTCTCGCTTCCACTTTGCCGACCACACCTTTAAGCTTGTCATCAACGCTTGGGCCCTCCTATCTGACCCCATCAAAAAAGTCGTCTATGACAAGGAGCTTTCCTTCTTATCTCGTGTCGATTTGTCGATCCACAAGTGGGTCCAACAGGAGAAGCTCTTGTCTACCTACAATGGAAAAAGGAAAAGCAGACAAATCTTAAGGTATAAACAAGGTGGAGTTGGAGACGAACCAGCAATGGCAAAGGGAAAAATACGAGGTGGAGACGAGGCAAGCAACAATGTCGGAGGGAAGAATGGCAAAGACGTGGAGGTGGAGGGAAACATGAACAGGGAAATAATGATGCGAATGTGggattttaaaagctttttaaattggttgcatgagagcttgatttaa 567 0.4462 MNSLVRDLGDKALLRRLRPNPSHRGHPLATDKSVNNHLDWYVVLQHYRLTILLHPDKSRFHFADHTFKLVINAWALLSDPIKKVVYDKELSFLSRVDLSIHKWVQQEKLLSTYNGKRKSRQILRYKQGGVGDEPAMAKGKIRGGDEASNNVGGKNGKDVEVEGNMNREIMMRMWDFKSFLNWLHESLI 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0233 188 Gene3D DnaJ domain 26 91 IPR036869 -
Ssu5g0233 188 Pfam DnaJ domain 45 87 IPR001623 -
Ssu5g0233 188 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 28 116 - -
Ssu5g0233 188 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 28 116 - -
Ssu5g0233 188 SUPERFAMILY Chaperone J-domain 36 90 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0233 Ssu-Chr5 4809426 4810492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0233 29 99 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.955 7.34e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0233 - - gmx:100816918 125.946