Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0182 ATGAGTCATGTTGTGTTTCTCTTCACActaacttttcttctttctttaaatGCCAAAGCACAGCAGAATTACTCTGGGGATTCAACATTCAAGTGCAATAACGATGACAAAATGGGTCCTTCACCTTCCTTCCTTTACACCTGCAATGGCCTCAACAAATCCTGCATGGCCTTCCTCATCTTCAAATCCAAACCTCCTTTCAACTCCATACCCACAATTTCCAACCTCACTTCATCAAACCCAGAAGAGCTTGCAAGAATCAATGATGCCACAGTGCTCTCAGGGTTCCCTATTGGTAAAGAGGTGATTGTCCCTGTGAACTGTTCTTGTTTAACTAGGCACTATTACCAAGctgaaaccaaatatatattGGGGCCAGATTCAACATATTTCACAGTGGCAAATGATGCCTTTCAGGGTTTGGTCACTTGTGATTCTCTCAAGCGTGCTAATCCATATGGGGAATTTGATTTGCAGCCTGGAATGGAATTGCATGTGCCACTCAGATGCGCTTGTCCAACATGGCATCAGACTAGAAGTGGCACCAAGTATTTACTAACGTATTCACTGAACTTGGGTGATAACATTGCAAATATTGCTACAAGGTTCAATGTAGCAGCAGGTAATGTGGTTGATGCCAATGGTTTTTCCACACAAACACAAGCTATTTATCCAGTCACAACTATTTTGATTCCTTTGTCAAGTGAACCGGTGAGTTCAATGACCACAGTTGTTAGTGATCCACCAACCATGTCACCTCTTCCTGTTTGCAGCTCCAAAAAGTGCAagtcaaagagaaaactctACACTGCTATTGCCACCACGGGGGGTTTCATGCTGGTTCTATGTGTTGTCTTATATGGGGTTTTTCTGTTCAGAAGGAGATCAGCAAGGTTCATTAAGAGAGGAGAAGAAGGTGAGAAAACAAAGAAGTTGTCTTCAGAATACATCCGCGGGGAGATAGCAATCATTGAACATCACTCCATAGTGTACAAGTTTGAGGAAATAAAGGAGGCCactgaaaattttagtttaaagaaTAGAATTAAAGGTTCTGTGTTTCGTGGGGCATTTGGTAATGGCAGGAACATATTGGCTGTCAAAAAGATGAGAGGAGATGCGGCCAAGGAAGTGAATTTGCTGAAAAGGATCAATCACTTCAACCTGATAAAGCTGCAAGGTTACTGTGAAAGCGATGGTTGCCTCTATCTTGTTTATGAATATATGGAAAATGGCTCTCTGAGAGAATGGCTTAGCAAGAACAGTGGAAACATAAACAGTGGCTTAGCAAAGAGGATCCAGATTGCTCTGGATATTGCCAATGGTCTTCAGTATCTTCACAACTTCACAGAACCTTGCTATGTGCACAGGAACATAAACAGTGGAAGCATTCTACTAAACAAAGATCTAAGGGCCAAGATAGCAAATTTTGCTCTTGCTGAAGAATCAGAAAGTAAAATAACTTCCAGTTGCGCCTCATCACATGTCGCGATATCGAGGGGTTATATGGCTCCAGAGTATCTGGAGGCAGGGATGGTCACTACCAAAATGGATGTTTATGCCTTCGGAGTGGTGCTGTTGGAATTGATCACGGGTAAAGATTCTGTTACCCTTCAAGATGGAAGAGAAGTAATGCTTCATGCAATCATAGTAAATCTCATTGGTAAAGAGAATGAAGCAGATAAGGTGAGTTTGTTCATTGATCCTAGCCTCGCCGGAAACAGTGAGAAAGTATTTGCTCTCCAGCTAGTTAAACTAGGTCTAGCCTGCTTGATCCAAGAGCCAGCAGAGAGACCAACCATGGTAGAGGCAGTCTCTAgcttattgaaaatatatgcaGGTTACATGGACCAAAGAATACCAACTAGCATCAACGACAATCTCGGCATGGGGAGGTGA 1899 0.4086 MSHVVFLFTLTFLLSLNAKAQQNYSGDSTFKCNNDDKMGPSPSFLYTCNGLNKSCMAFLIFKSKPPFNSIPTISNLTSSNPEELARINDATVLSGFPIGKEVIVPVNCSCLTRHYYQAETKYILGPDSTYFTVANDAFQGLVTCDSLKRANPYGEFDLQPGMELHVPLRCACPTWHQTRSGTKYLLTYSLNLGDNIANIATRFNVAAGNVVDANGFSTQTQAIYPVTTILIPLSSEPVSSMTTVVSDPPTMSPLPVCSSKKCKSKRKLYTAIATTGGFMLVLCVVLYGVFLFRRRSARFIKRGEEGEKTKKLSSEYIRGEIAIIEHHSIVYKFEEIKEATENFSLKNRIKGSVFRGAFGNGRNILAVKKMRGDAAKEVNLLKRINHFNLIKLQGYCESDGCLYLVYEYMENGSLREWLSKNSGNINSGLAKRIQIALDIANGLQYLHNFTEPCYVHRNINSGSILLNKDLRAKIANFALAEESESKITSSCASSHVAISRGYMAPEYLEAGMVTTKMDVYAFGVVLLELITGKDSVTLQDGREVMLHAIIVNLIGKENEADKVSLFIDPSLAGNSEKVFALQLVKLGLACLIQEPAERPTMVEAVSSLLKIYAGYMDQRIPTSINDNLGMGR 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0182 632 Pfam LysM domain 193 232 IPR018392 -
Ssu5g0182 632 Pfam Protein tyrosine and serine/threonine kinase 371 606 IPR001245 GO:0004672|GO:0006468
Ssu5g0182 632 Gene3D Transferase(Phosphotransferase) domain 1 409 623 - -
Ssu5g0182 632 Gene3D Phosphorylase Kinase; domain 1 304 408 - -
Ssu5g0182 632 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 4 617 - -
Ssu5g0182 632 ProSiteProfiles LysM domain profile. 186 231 IPR018392 -
Ssu5g0182 632 SUPERFAMILY Protein kinase-like (PK-like) 325 608 IPR011009 -
Ssu5g0182 632 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 4 617 - -
Ssu5g0182 632 ProSiteProfiles Protein kinase domain profile. 294 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0182 Ssu-Chr5 3638260 3640158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0182 6 614 Receptor kinase-like Gene Family AT2G23770 37.342 2.09e-126 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Ssu5g0182 PK_Tyr_Ser-Thr 2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0182 - - gmx:100806221 1007.67