Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0180 ATGGCAAATGGGTTTGGGGAATCAACTAGCAGGTCACCCCCAAGCCCTTCCTGCTCCAGCAACAGTAATAACAATGATGCTGGGAACTTTGAGTGCAACATTTGCTTTGACTTGGCCCAAGATCCTATAATTACTTTATGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTGCACTTGCACTCGCAGTCACGAGAATGCCCGGTGTGCAAGGCACTCGTTGAAGAGGAGAAGTTAGTTCCCTTGTATGGGAGAGGAAAGACATCGACTGACCCGAGATCAAAGTCTATTCCCGGTGTTAATATCCCGCATCGTCCTGCTGGTCAGAGACCTGAAACTGCTCCTCCACCTGAACCAAACCCTTTTTCTCAACATGGGTTTGGCTTCACAGGAGGATTGGGAGGATTTGCACCCACATCAACTGCAAGATTTGGGAATTTCACATTATCCGCAGCATTTGGTGGTTTTATACCATCCTTATTTAACTTTCAGTTGCATGGATTGCACAATGTGACCATGTATGGTGGAGCAGCTGGTTTTCCTTATGGGTTTTCATTTCACAATGGCCATGTTCATAGATATCCTCCGCACACAGGTCAAGGGCAACAAGATTATTATCTGAAGAGGCTGCTGCTGcttgttattttttgtgttgttcTTGCTTTTATTTGGCAATAG 684 0.4444 MANGFGESTSRSPPSPSCSSNSNNNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHLHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPEPNPFSQHGFGFTGGLGGFAPTSTARFGNFTLSAAFGGFIPSLFNFQLHGLHNVTMYGGAAGFPYGFSFHNGHVHRYPPHTGQGQQDYYLKRLLLLVIFCVVLAFIWQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0180 227 MobiDBLite consensus disorder prediction 86 123 - -
Ssu5g0180 227 Pfam Zinc finger, C3HC4 type (RING finger) 31 72 - -
Ssu5g0180 227 CDD RING-HC_AtRMA_like 30 74 - -
Ssu5g0180 227 PANTHER OS12G0636000 PROTEIN 2 227 - -
Ssu5g0180 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Ssu5g0180 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 86 IPR013083 -
Ssu5g0180 227 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Ssu5g0180 227 SMART ring_2 32 72 IPR001841 -
Ssu5g0180 227 MobiDBLite consensus disorder prediction 1 22 - -
Ssu5g0180 227 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Ssu5g0180 227 SUPERFAMILY RING/U-box 29 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0180 Ssu-Chr5 3597685 3598368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0180 16 210 C3H Transcription Factor Family AT1G19310 66.029 8.14e-87 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0180 K10666 - gmx:100527488 365.54