Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0170 ATGCCATCTAATTACTTTTCAAGGCTTGGAGCTTCAATTCAGAGATCGGTTGTGGGGAAAGAAGGTGGAATCCGGGACTCTGCTGAAGTTCTGATTGGGCAAGGGAAGTCGTGGTTTGGTAGTTCTAAGTTTTTTCATTCTGTGCATAGCTCATATTGTGTGGAACTGCGCCTGCTTGTGTGCCCCGGCATTGCCTTAGCTTCGAGCTCTGAATTAGCTGGCAAAAGAAGAACATTGTCGGTAGTTGACACGCTGTCCCGAACGTTTTCTGTCCCATCTGTGTCGGGGCCTTCATTTCAGGTCTGTGGATACCACATTTGTTGTGCCCTTGCTGGACCTGATCAGTTTTCGAGTGGCACCAAGTTTCGGATTAAGACAATGGCTGCTCACTTGCCCAGAATAGTGGTTGGTGAATCCTGTTTAGATAACCCAACTTTGAAGGGTACTCACCCTTCGCTGTCAACCAAGAATAGCAGTAATATGTGTTTAAGCACGAGTTTGAGGAATGGTGGAAAAGTGAGCATGAGTTTGAAAAATCATCAGCAGCCAGATAACCGTGCGATTTatggatattttatttataacgtGGCCAAGACCTGGTGCAATTCTCACCCTTACATGCAGTCGGGTTCTGGAGATTTCCATAGTTTGTCAACCTCGTGTTACTCTGTTGGGCCTGCTCATGATGTGCCTTTTGACACTTGTGCCCGCGAGGAACAGTTAAGCAGTTCTGCAGATTCATCTGAACAGAAAACTCCTTCAGGCAAGACCCTTAAGTTAATATCAGGATCATGCTACTTGCCTCATCCTGATAAAGAAGAAACAGGTGGAGAAGATGCTCATTTTATATGTTCTGATGAACAAGCAATAGGGGTGGCAGATGGTGTTGGTGGGTGGGCAGATCTTGGTGTTAATGCTGGACATTACTCTCGTGAGCTCATGTCCAAATCAGTGGAAGCTATTCAGGAGGAGCCCAAAGGTTCAATTGACCCAGCTAGGGTGCTGGAAAAAGCACATTCAAGTACAAAAGCTAAGGGTTCCTCTACAGCATGCATCATTGCACTTACCGATCAGGGCCTTAATGCTATCAATTTGGGAGACAGTGGCTTTATGGTGGTCCGGGATGGGTGCACCATATTCCGGTCCCCAGTGCAGCAACATGATTTCAATTTCACCTATCAGCTGGAATGTGGTAGTAATGGTGATTTACCTAGTTCTGGTCAGGTTTTTACCATTCCCGTTGCACCTGGCGATGTCATAGTTGCTGGTACGGATGGGCTGTTTGATAACTTATACAATAATGAGATTACGGCTGTGGTGGTTCATGCCATGAGAGCTGGCTTAAGCCCTCAGGTGACAGCACAGAAGATAGCTGCATTGGCACGTCAACGGGCACTCGATAAAGACAGGCAGACTCCTTTTTCAACTGCTGCTCAAGATGCTGGTTTCCGTTACTATGGTGGCAAGCTTGATGATACTACAGTTGTAGTTTCATATATTACAGGCTCTGGAGATGCATAA 1521 0.4576 MPSNYFSRLGASIQRSVVGKEGGIRDSAEVLIGQGKSWFGSSKFFHSVHSSYCVELRLLVCPGIALASSSELAGKRRTLSVVDTLSRTFSVPSVSGPSFQVCGYHICCALAGPDQFSSGTKFRIKTMAAHLPRIVVGESCLDNPTLKGTHPSLSTKNSSNMCLSTSLRNGGKVSMSLKNHQQPDNRAIYGYFIYNVAKTWCNSHPYMQSGSGDFHSLSTSCYSVGPAHDVPFDTCAREEQLSSSADSSEQKTPSGKTLKLISGSCYLPHPDKEETGGEDAHFICSDEQAIGVADGVGGWADLGVNAGHYSRELMSKSVEAIQEEPKGSIDPARVLEKAHSSTKAKGSSTACIIALTDQGLNAINLGDSGFMVVRDGCTIFRSPVQQHDFNFTYQLECGSNGDLPSSGQVFTIPVAPGDVIVAGTDGLFDNLYNNEITAVVVHAMRAGLSPQVTAQKIAALARQRALDKDRQTPFSTAAQDAGFRYYGGKLDDTTVVVSYITGSGDA 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0170 506 Gene3D - 403 503 IPR036457 -
Ssu5g0170 506 ProSiteProfiles PPM-type phosphatase domain profile. 261 500 IPR001932 -
Ssu5g0170 506 PANTHER PROTEIN PHOSPHATASE 89 505 - -
Ssu5g0170 506 SUPERFAMILY PP2C-like 265 497 IPR036457 -
Ssu5g0170 506 Gene3D - 270 397 IPR036457 -
Ssu5g0170 506 PANTHER PROTEIN PHOSPHATASE 2C 89 505 IPR039123 -
Ssu5g0170 506 SMART PP2C_4 251 498 IPR001932 -
Ssu5g0170 506 Pfam Stage II sporulation protein E (SpoIIE) 288 498 IPR001932 -
Ssu5g0170 506 SMART PP2C_SIG_2 260 500 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0170 Ssu-Chr5 3341679 3346314 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0170 K17508 - gmx:100805475 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0170 5 3341679 3346314 Ssu5g0170 5 3341679 3346314 ECH