Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0163 ATGCATCATCTTCTACTCTTTGCGGTCCTTGCTCTGCTTCTAGTGTTTGCCGCAAAAGTCGCATATTCAATCATTTGGGTGCCGTGGAGCATTGCACGTCACTTTCGTAAGCAAGGCATAAGGGGTCCCTCCTACCGTCCGATCAAAGGGAACACAGATGAGATCCACAGCATGTACGCGGAAGTTCAATCCAAGCCAATGGCGTTAAACCACGACATCCTTGAGCGTGTGTGTCCATTCTATCACAAGTGGTCACGCATGTACGGGAAAACTGTTCTGTATTGGCACGGGTCGAAACCCAAGCTGGTCTTATCCGACCCGGATATGATTAAGGAGATCCTTTTGAAAACGGGTGAATCGTTTGAGAGGCCAGATCCGAATCCGTCTTCGAAACAGTTCTTTGGAGAAGGAATACTGGTGATTAAAGGAGAGAAATGGGCTGTGCATAGAGCAATAGCTAACCAGGCTTTTAAAATAGAGCGGGTTAAGTCTTGGATTCCACAAATTATAGATAGCATAAAAACAATGTTTTACAAGTGGGAAGATGAGAACCAAGGCATTGATGAATTTGAGATTGAAGTGAGTAAAGATCTCCATGACCTTACATCTGATATTATATCCAAAGTCGCTTTTGGAAGCAACTATGAAGAAGGGAAGGAGATTTTTGGGTTACTAGAACAACATTATCATTTGGTCTCCCATGCCATCAGAAGTGTTTATTTTCCTGGGTTCAGGTTTCTACCTACTAAGAAgaacagagaaagaaagagactaGAGAAGAAAACTCGTGAATTAATTCAAGTGTTGATTGAGGATAGTCataaagcaaaacaaaattcaGAAAATTTGCTTTCTCTGTTGATGTCTTCTCACAAATTTATCAACAATGAGACACAAAAGTTAAGGTTGGACGAGATAGTAGAtgattgtataaatttttatatggcAGGTAAGGAAACAAGTGCAAATTCATTAAGTTGGGCACTCCTCCTTTTAGGGATAAATCAAGAATGGCAAAGCCAGGCACGTGAGGAGGTACTTGGTGTTTTAGGACCTAATACTCCCCCAACTTCAGAAACATTAAGTGACCTAAAACTTGTGAACTTGATACTTCAAGAAGCACTTCGACTTTACCCTAATCCTGGGGCATTGGTAAGGCAAGTAAATAAAAGAGTTCAGCTAGGGAATATTGATATTCCTGTTGGTACACAACTATATTTATCTATCACATCAGCTCATCATGATACTAAGTTATGGGGAGAAGATGCTCTTGAATTCAATCCTATGAGATTTGTCGAGCCTCGAAAGCATTTAGCTCCATATTTTCCCTTTGGATTAGGTCCTAATTATTGTGTGGGCCAAAATTTAGCTttgtttgaaatgaaaattgtacTTGCCATGGTGTTACAGAGGTATTCCTTTGTTGTATCACCCACATATGCTCATGGGCCAATGCTGTTGATGTCTGTGACACCTCAATATGGCATGCAAATTGTCTTTAGGAGATTATGA 1512 0.3889 MHHLLLFAVLALLLVFAAKVAYSIIWVPWSIARHFRKQGIRGPSYRPIKGNTDEIHSMYAEVQSKPMALNHDILERVCPFYHKWSRMYGKTVLYWHGSKPKLVLSDPDMIKEILLKTGESFERPDPNPSSKQFFGEGILVIKGEKWAVHRAIANQAFKIERVKSWIPQIIDSIKTMFYKWEDENQGIDEFEIEVSKDLHDLTSDIISKVAFGSNYEEGKEIFGLLEQHYHLVSHAIRSVYFPGFRFLPTKKNRERKRLEKKTRELIQVLIEDSHKAKQNSENLLSLLMSSHKFINNETQKLRLDEIVDDCINFYMAGKETSANSLSWALLLLGINQEWQSQAREEVLGVLGPNTPPTSETLSDLKLVNLILQEALRLYPNPGALVRQVNKRVQLGNIDIPVGTQLYLSITSAHHDTKLWGEDALEFNPMRFVEPRKHLAPYFPFGLGPNYCVGQNLALFEMKIVLAMVLQRYSFVVSPTYAHGPMLLMSVTPQYGMQIVFRRL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0163 503 Gene3D Cytochrome P450 26 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g0163 503 PRINTS P450 superfamily signature 451 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g0163 503 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g0163 503 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g0163 503 PRINTS P450 superfamily signature 442 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g0163 503 SUPERFAMILY Cytochrome P450 38 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g0163 503 PANTHER CYTOCHROME P450 FAMILY MEMBER 2 498 - -
Ssu5g0163 503 Pfam Cytochrome P450 80 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g0163 503 PRINTS E-class P450 group I signature 451 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g0163 503 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g0163 503 PRINTS E-class P450 group I signature 85 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g0163 503 PRINTS E-class P450 group I signature 382 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g0163 503 PRINTS E-class P450 group I signature 441 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g0163 503 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g0163 503 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g0163 503 PRINTS E-class P450 group I signature 109 130 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g0163 503 PANTHER CYTOCHROME P450 FAMILY 709 PROTEIN 2 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0163 Ssu-Chr5 3190006 3192577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0163 22 503 Cytochrome P450 AT1G75130 49.072 1.77e-172 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0163 - - gmx:100789281 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0163 5 3190006 3192577 Ssu5g0163 5 3190006 3192577 ECH