Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0153 ATGTTTCATCGGTGGAGCAATTCTCCTCAACAAGACCATGAAAGCAGCGAGCTTTATGCTGAGTCCAAGATTAAGGAGCTGAAGGGTGCAATTGGACCCTTATCAGGACGCAGTTTGATGTATTGCACTGATACTTGTTTGAGGAGATATCTGGAAGCTCGAAACTGGAATGTGGACAAGTCCAAGAAGATGTTGGAGGAGACACTTAGGTGGAGATCGACCTATAAGCCAGAGGAAATTCGCTGGCATGAGGTTGCAATGGAAGGGGAGACTGGGAAATTGTATAGAGCAAGTTTTCATGATAGACAAGGACGGACTGTTCTTATTTTGAGACCTGGAATGCAGAACACTACTTCGATGGAGAATCAGATGCGGCATCTTGTGTATCTTTTGGAAAATGCCATGCTCAATCTTCCACCGGATCAAGAACAAATGGCGTGGTTGATTGATTTCACTGGGTGGTCATTGACCAACAATGTGCCCATTAGATCAGCCAGAGAGACCATCAACATTTTGCAGAACCATTATCCTGAGAGGCTTGCCATAGCATTTCTTTACAACCCCCCTCGAATTTTTGAAGCTTTTTGGAAGATAGTCAAGTACTTCTTGGATAACAAGACATTTCAAAAAGTGAAGTTTGTCTACCCGAAAAATAAAGATAGTGTGGAGCTCATGAAGTCCTATTTTGACGAGGAAAACCTTCCCGAAGAACTAGGTGGAAAAAGCATAATGAGTTATAACCATGAGGAGTTCTCCAGATTAATGGTTCAAGATGATTTGAAGTGTGCAGCATTTTGGGGATCTGATGAGAAGCTCTCAAACCACGTTGCGAACGGGCATTCTGCAGCAGTAATGAAACCCCACGAACCTGAGGCATGTTAA 882 0.4331 MFHRWSNSPQQDHESSELYAESKIKELKGAIGPLSGRSLMYCTDTCLRRYLEARNWNVDKSKKMLEETLRWRSTYKPEEIRWHEVAMEGETGKLYRASFHDRQGRTVLILRPGMQNTTSMENQMRHLVYLLENAMLNLPPDQEQMAWLIDFTGWSLTNNVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKIVKYFLDNKTFQKVKFVYPKNKDSVELMKSYFDEENLPEELGGKSIMSYNHEEFSRLMVQDDLKCAAFWGSDEKLSNHVANGHSAAVMKPHEPEAC 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0153 293 SMART sec14_4 88 243 IPR001251 -
Ssu5g0153 293 PANTHER RANDOM SLUG PROTEIN 5-LIKE 19 292 - -
Ssu5g0153 293 Pfam CRAL/TRIO domain 93 240 IPR001251 -
Ssu5g0153 293 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 82 246 IPR001251 -
Ssu5g0153 293 SUPERFAMILY CRAL/TRIO N-terminal domain 21 84 IPR036273 -
Ssu5g0153 293 SMART CRAL_TRIO_N_2 43 68 IPR011074 -
Ssu5g0153 293 CDD SEC14 100 241 IPR001251 -
Ssu5g0153 293 Pfam CRAL/TRIO, N-terminal domain 25 67 IPR011074 -
Ssu5g0153 293 SUPERFAMILY CRAL/TRIO domain 82 253 IPR036865 -
Ssu5g0153 293 PANTHER GH16843P 19 292 - -
Ssu5g0153 293 Gene3D - 5 276 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0153 Ssu-Chr5 3040276 3041875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0153 47 235 Acyl Lipid Metabolism Gene Families AT5G47730 28.293 3.34e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0153 - - aprc:113847293 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0153 5 3040276 3041875 Ssu5g0153 5 3040276 3041875 ECH