Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0144 ATGACAGTGACGACAAGCGGACCCGCCGTGGGAGTTCGGATCCAGCAGCAGAGCAGAATGGTGCTCCCGGATTTCCTGCAGAGCGTGAATCTGAAGTACGTGAAATTAGGTTACCACTACTTGATCTCCAACCTCGTAACCCTATTCGTGGTCCCCTTGATCCTCGTGACGCTCATCCAGGTGTCCCAAACCACCGACCTCGACCAGCTCTGGCTCCACCTCCAATACAACCTCCTCACCATCCTCACCTGCTCCGCCGTCCTGGTCTTCGGCCTCACCGTCTACGCCGTGACGCGCCCCCGCGCCGTCTACCTCGTCGACTTCGCCTGCTTCCGCCCCGGCGACGACCTCAAGGCCCCGTTCCACAGCTTCATGGAACACTCCCGCCTCACGGGGGACTTCGAGGATTCCTCGCTCGAGTTCCAGCGAAAGATCCTCGAGCGCTCTGGCCTCGGGGAGGAGACCTACGTCCCCGAGGCCATGCACTTCATCCCGCCTCGGCCCTCCATGGCCGCGGCCAGGGCCGAGGCGGAACAAGTCATGTTTGGTGCCTTGGACAACCTTTTCCAAAACACCAGTCTCAAGCCCAAGGATATTGGCATCCTTGTTGTGAATTGTAGTTTGTTTAACCCCACGCCTTCGCTGTCTGCCATGATTGTTAACAAGTACAAACTGAGGGGGAACATTAGGAGCTTTAATCTCGGGGGGATGGGGTGCAGTGCCGGGGTCATTGCTGTTGACCTTGCTAAGGACCTTTTGCAGGTTCATAGGAACACTTATGCTGTCGTTGTTAGCACCGAGAACATTACTCAGAATTGGTACTTCGGGAACAAGAAATCCATGCTCATTCCCAATTGCTTGTTTCGCGTTGGCTGCGCCGCGCTGCTGCTCTCCAGCAAGCCGGCCGATCGGAGGAGGGCCAAGTATAGGCTTGTTCATGTCGTGAGGACTCACCGCGGCGCCGATGACAAGGCATTCCGGTGTGTTTACCAGGAGCAGGATGACGCTGGCAAGACTGGTGTTTCTTTGTCTAAGGATTTGATGGCCATTGCCGGTGGAGCACTCAAGACCAACATCACCACTCTTGGTCCTTTGGTGCTGCCGATTAGTGAGCAGCTCCTGTTTTTCGCGACTTTGCTGATGAAGAAGTTGTTCAAGGCTGATGTCAAGCCTTATATACCGGATTTCAAGCTTGCCTTTGATCATTTTTGCATACACGCTGGGGGCAGGGCTGTGATTGATGAGTTGGAGAAGAACCTGCAGCTGCTCCCTGAGCATGTGGAGGCTTCTAGGATGACCCTTCACCGGTTTGGGAACACTTCCTCCAGCTCCATTTGGTATGAGTTGGCTTACATTGAAGCCAAAGGGAGGATGAAGAAGGGCAACAGGATTTGGCAAATTGCATTTGGAAGTGGTTTCAAATGTAACAGTGCCGTTTGGCAGGCGCTGGGAAATGTGAAACCTTCTCCTAGTGGACCATGGGAAGATTGCATTGATAGGTATCCTGTGGAAATAGTCACATAG 1524 0.5413 MTVTTSGPAVGVRIQQQSRMVLPDFLQSVNLKYVKLGYHYLISNLVTLFVVPLILVTLIQVSQTTDLDQLWLHLQYNLLTILTCSAVLVFGLTVYAVTRPRAVYLVDFACFRPGDDLKAPFHSFMEHSRLTGDFEDSSLEFQRKILERSGLGEETYVPEAMHFIPPRPSMAAARAEAEQVMFGALDNLFQNTSLKPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDLLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGCAALLLSSKPADRRRAKYRLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFATLLMKKLFKADVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMKKGNRIWQIAFGSGFKCNSAVWQALGNVKPSPSGPWEDCIDRYPVEIVT 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0144 507 CDD CHS_like 85 480 - -
Ssu5g0144 507 Gene3D - 124 482 IPR016039 GO:0016746
Ssu5g0144 507 PANTHER 3-KETOACYL-COA SYNTHASE 4 17 506 - -
Ssu5g0144 507 PANTHER 3-KETOACYL-COA SYNTHASE 17 506 IPR012392 GO:0006633|GO:0016020|GO:0016747
Ssu5g0144 507 SUPERFAMILY Thiolase-like 89 307 IPR016039 GO:0016746
Ssu5g0144 507 PIRSF Very_long_ch_3-ktacl-CoA_syn 24 507 IPR012392 GO:0006633|GO:0016020|GO:0016747
Ssu5g0144 507 SUPERFAMILY Thiolase-like 312 481 IPR016039 GO:0016746
Ssu5g0144 507 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 400 481 IPR013747 -
Ssu5g0144 507 Pfam FAE1/Type III polyketide synthase-like protein 95 384 IPR013601 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0144 Ssu-Chr5 2899057 2900580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0144 16 505 Miscellaneous Gene Families AT1G19440 82.927 0.0 864
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0144 K15397 - gmx:100797855 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0144 5 2899057 2900580 Ssu5g0144 5 2899057 2900580 ECH