Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0139 ATGTCCAGTGACGGTGCAACAGCTATGGAGATTCAATTTCCAAGCTACTGTAAAGTCAAGGTACACCGTTCAATATGCTTAGAGCTTCTTAGACTCATTGATAGAATTTTGCATATAATTTTAGCCATCGAGTCAGCCCGACCAAATTGTGCATTAGCGGTGCAGACATTGTGCTCACTACACTCCACTTTGGCCAAAGCCAAGTCAGTTATCGAACATTGTTCCGAGTGCAGTAAACTCTATCTGGCAATCATATCGCATAAGATACTTTCAAGATGTCAAAGAATACGAAATGCTTTTGAGTTGTACTTGAGTCAGATTCAAAATGCGGTTCCAATACCATTGGCTGCTAAGATATCTGCAATGCTACACGACCTTAGGGATACAGAATTTTCCGTGGAATTTGCAGAAGGCGAGGCTAGGAAAGTAGTACTTTCACTGCTTGAGAAGAATTTTCCTGATTCAGCTTCTATGGCAAAGGAAGAATTAGAAGCTATTCAAATTGCAACTTCGAGGTTGGAGATCAAATCCCCGTTCTCTCTCTTAGTAGAGAAAGCAACTCTTAAGAGGCAACTCGAAGACCTCAGTGAAACAAACCTAAAGGAGAAGGAGCTTCTAGAATACCTTTTGTATCTCTTGATCAAATATGGTAAATCCATTTGTCAGTTTCCAAATAGATGCCACTCCTTGAAACATGAATGTCATGACCAATCCTTTGGGCACAAGTTGGTTGTGGATGAAGCAATATGTGAGAATCAAGTCAAGGACTCACTTAAAACAGAAGTTGGAGATCTATGA 798 0.4035 MSSDGATAMEIQFPSYCKVKVHRSICLELLRLIDRILHIILAIESARPNCALAVQTLCSLHSTLAKAKSVIEHCSECSKLYLAIISHKILSRCQRIRNAFELYLSQIQNAVPIPLAAKISAMLHDLRDTEFSVEFAEGEARKVVLSLLEKNFPDSASMAKEELEAIQIATSRLEIKSPFSLLVEKATLKRQLEDLSETNLKEKELLEYLLYLLIKYGKSICQFPNRCHSLKHECHDQSFGHKLVVDEAICENQVKDSLKTEVGDL 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0139 265 Coils Coil 185 205 - -
Ssu5g0139 265 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 5 25 238 - -
Ssu5g0139 265 Gene3D - 13 112 IPR036537 GO:0007166
Ssu5g0139 265 PANTHER U BOX DOMAIN-CONTAINING 25 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0139 Ssu-Chr5 2836079 2837773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0139 20 194 U-box Gene Family AT4G36550 41.714 3.13e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0139 - - gmx:100796783 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0139 5 2836079 2837773 Ssu5g0139 5 2836079 2837773 ECH