Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0138 ATGATTTGGAGAACCTTAGCTTCCACTTCGACACACACAATCAAAAAACTCAATGCACTCTTACGATCCCCTTCCACCACCTTCCCTTCTTCAATCCACCCACGCGCCTCTTTCCTCCACGCGCCATCCGCCACGAGCCTTCATCCCCCCCAACCCAGCACCGCCCTCGTCGACCCGAAACGGCACCCTCCGCAAAACGACGGCGACGACGACGAAACGACGAGCGAGTTCCTCTCGCGATTCGCGTGGATAATGCGGAAGAAGGTGAAGGAAGCGTACCCGGAGTCCGACAAGGCCACCGTGGACGGCATGCTCGTGGCGATCGTGGAGAGGGTCGCGTCGGAAATGGAAAACGGCGGCATCGAAACGGCGTCGTTTCGTTCGGGTGATTTCAGCGAGGACTTGTGGCGTACGGTGTGGGAGGTGAGCAATCTGGTGTTGGAGGACATGAAcaaggagaggaagaaggagaaaatGAAGGGTTTCTTGCAGTGCGAGGAGGTTAAGGAAATGTGCCGATTCGCCGGCGAAGTCGGCATTCGCGGCGATTTGCTCAGAGAGCTTAGGTTCAAGTGGGCGCGTGAGAAGATGGAGGAACACGAATTCTACGAGGGTTTggaaaaaataaggaaagagGCACAGACAGAAAGCGAGAACAAGGAATTTGATGTTGCTGAGGAAAAGGGGAAGGAGAAGGACAAGGTTGTTGTTGGGCTTCCCAAGAGGAGAGGGAAGATAAGGTACAAGATTTATGGGCTTGATCTCTCTGATCCCAAGTGGGCACAGGTGGCTGATAGGATCCATGAGGCAGAGCAAGTGCTCTGGCCACAGGAGCCCAAGGCAATTACCGGGAAAGCGAAGATTGTTACGTCGGAGATTCTGTCGTTGAAGGAGGAGGATGATGGTTTGCAAAGCCTGTTGGCTGAGTGGGTGAAGCTTGTACAGCCTAGCAGGGTGGAATGGATGGATTTGCTTGACAAATTGAAAGAGCAGAATCCTGGTTTGTACTTGAAGGTGGCTGAAATGGTATTGACTGAAGATTCTTTCCAAACAAGTGTATCTGACTACTCTAGGCTTATTGATGTCTATGCTAAAGAGAACTGctttgatgatgttgagagaatCCTTAAGAAGATGAATGAAAATGGTATACAACCAGATGCTTCAACAGCCAGTTCGTTGGTACACATGTACTGCAAGGGAGGCAATCTTGCACGTGCAAATGAAGCATTTGAAGTCTTGATGAGCCAGGGCTTCCAACCAGATGCTAAAGTCTACAACTCAATGATCATGGCCTTCGTAAATAATGACCAGCCTAAGTTGGGCGAGAAATTGATGAGGGAGATGGAGGCGAAAGATATGAAACCCACAAAGGAAATATACATGGCATTGCTCCGTTCTTTTTCTCAACATGGTGATACTCAAGGAGCCGAACGAATTTCAACAACTATGCAGTTTGCAGGATTCCAGCAGAGTATGGAGACATGCACCCTGCTTATTGAGGCAAGCGCACTTGCTGGTGACCCTGATCAGGCAAGAAGCCATTTTGACTACATGATAAAATTTGGGCATAAGCCTGATGATAGGTGCACTGCTAGCATGATTGCAGCTTATGAGAAGAAAAATTACTTGGATAATGCATTAAATCTTCTATTGGAGTTAGAGAAGGATGGGTTTGAGCCTGGGGTTGCCACTTATTCTGTTCTTGTGGACTGGTTGGGTAAGTTGCAGCTTGTTGACGAGGCTGAGCAGCTTTTAGGCAAAATAGCTCTGCAGGGTGAGGCTCCTCCTTTTAAGCTTCAAGTGAGTCTTTGTGATATGTATGCAAGGGCCAGAAATGAGAAAAAGGCTCTTCAAACTCTAGGCATTTTGGAAGCTAGGAAGGATGAATTAGGACCAGCTGAGTTTGAGAGAATTATCAATGGCCTTATTGATGGTGGGTTTCGGCAGGATGCACAAAGAATATGTCAGATCATGGAGGCACAGGGTTTTGATGCATCAAGGGTTAAGGTTAACCTTTTGAAACCTGTCTCCAGAGCACCGAGTATGAGATAG 2055 0.471 MIWRTLASTSTHTIKKLNALLRSPSTTFPSSIHPRASFLHAPSATSLHPPQPSTALVDPKRHPPQNDGDDDETTSEFLSRFAWIMRKKVKEAYPESDKATVDGMLVAIVERVASEMENGGIETASFRSGDFSEDLWRTVWEVSNLVLEDMNKERKKEKMKGFLQCEEVKEMCRFAGEVGIRGDLLRELRFKWAREKMEEHEFYEGLEKIRKEAQTESENKEFDVAEEKGKEKDKVVVGLPKRRGKIRYKIYGLDLSDPKWAQVADRIHEAEQVLWPQEPKAITGKAKIVTSEILSLKEEDDGLQSLLAEWVKLVQPSRVEWMDLLDKLKEQNPGLYLKVAEMVLTEDSFQTSVSDYSRLIDVYAKENCFDDVERILKKMNENGIQPDASTASSLVHMYCKGGNLARANEAFEVLMSQGFQPDAKVYNSMIMAFVNNDQPKLGEKLMREMEAKDMKPTKEIYMALLRSFSQHGDTQGAERISTTMQFAGFQQSMETCTLLIEASALAGDPDQARSHFDYMIKFGHKPDDRCTASMIAAYEKKNYLDNALNLLLELEKDGFEPGVATYSVLVDWLGKLQLVDEAEQLLGKIALQGEAPPFKLQVSLCDMYARARNEKKALQTLGILEARKDELGPAEFERIINGLIDGGFRQDAQRICQIMEAQGFDASRVKVNLLKPVSRAPSMR 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0138 684 PANTHER OS07G0661900 PROTEIN 28 678 IPR044657 -
Ssu5g0138 684 Gene3D Tetratricopeptide repeat domain 328 504 IPR011990 GO:0005515
Ssu5g0138 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Ssu5g0138 684 Pfam PPR repeat 565 588 IPR002885 -
Ssu5g0138 684 Pfam PPR repeat 533 559 IPR002885 -
Ssu5g0138 684 MobiDBLite consensus disorder prediction 42 73 - -
Ssu5g0138 684 Gene3D Tetratricopeptide repeat domain 505 603 IPR011990 GO:0005515
Ssu5g0138 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Ssu5g0138 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
Ssu5g0138 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Ssu5g0138 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Ssu5g0138 684 TIGRFAM PPR: pentatricopeptide repeat domain 391 423 IPR002885 -
Ssu5g0138 684 TIGRFAM PPR: pentatricopeptide repeat domain 425 457 IPR002885 -
Ssu5g0138 684 TIGRFAM PPR: pentatricopeptide repeat domain 356 388 IPR002885 -
Ssu5g0138 684 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 5, MITOCHONDRIAL 28 678 - -
Ssu5g0138 684 Pfam Pentatricopeptide repeat domain 374 436 IPR002885 -
Ssu5g0138 684 Pfam Pentatricopeptide repeat domain 480 526 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0138 Ssu-Chr5 2830839 2833727 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0138 348 674 Glycosyltransferase AT1G05670 26.606 5.01e-33 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0138 - - gmx:100801933 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0138 5 2830839 2833727 Ssu5g0138 5 2830839 2833727 ECH