Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0136 ATGAACAGGTCTAATTTTCTGGGCACCAAGTTTACGATCATGGATGGTGAGCCCCCACATGATTCTTCACTTCCACTGAATTGCAAGTTGCAGCAAAAAGTCCATCTGAAGCAAGTACTTCCTAAGGTTGCCGCTGCCAACTACAAAGTGGCCACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGCGAATGCGGTGTACGATGCACTTAATCCCCATATCTGCAATCCAAGAAGGAGGGACTGCCCCTACTCCTTTGAAGTTTACCAATTATCTTAATGAGCATGCATCTACCACCACCCCAGACTCAACTGGCTTTGACAATACTCCAGAATCAACCCAGAGGGCAAGGGAACCACTGGTTTTGAAAAACAAAGCTCCTAGATGGCATGAACAACTGCAATGTTGGTGCCTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTTGTGGCAGCTGCTGAACCAAGCCAAAATGTTTCACCTGCAGAACAAGAAAAAGTGATACTACAATTtggaaaaattgggaaggacaTATTCACCATGGATTACCGATATCCCCTCTCAGCTTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 651 0.4409 MNRSNFLGTKFTIMDGEPPHDSSLPLNCKLQQKVHLKQVLPKVAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPISAIQEGGTAPTPLKFTNYLNEHASTTTPDSTGFDNTPESTQRAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPSQNVSPAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0136 216 MobiDBLite consensus disorder prediction 101 120 - -
Ssu5g0136 216 MobiDBLite consensus disorder prediction 101 119 - -
Ssu5g0136 216 Gene3D Tubby Protein; Chain A 2 216 IPR025659 -
Ssu5g0136 216 PANTHER TUBBY-RELATED 3 216 - -
Ssu5g0136 216 PANTHER TUBBY-LIKE F-BOX PROTEIN 3 216 - -
Ssu5g0136 216 ProSitePatterns Tub family signature 2. 201 216 IPR018066 -
Ssu5g0136 216 PRINTS Tubby superfamily signature 194 216 IPR000007 -
Ssu5g0136 216 PRINTS Tubby superfamily signature 47 74 IPR000007 -
Ssu5g0136 216 PRINTS Tubby superfamily signature 126 143 IPR000007 -
Ssu5g0136 216 PRINTS Tubby superfamily signature 173 192 IPR000007 -
Ssu5g0136 216 PRINTS Tubby superfamily signature 144 160 IPR000007 -
Ssu5g0136 216 SUPERFAMILY Tubby C-terminal domain-like 3 216 IPR025659 -
Ssu5g0136 216 Pfam Tub family 3 211 IPR000007 -
Ssu5g0136 216 ProSitePatterns Tub family signature 1. 144 157 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0136 Ssu-Chr5 2824724 2825374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0136 3 216 TUB Transcription Factor Family AT1G47270 62.557 1.06e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Ssu5g0136 Tub 4e-77 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0136 K19600 - gmx:100796250 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0136 5 2824724 2825374 Ssu5g0136 5 2824724 2825374 ECH