Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0135 ATGCCATTCAGGGGCATAGTGCGTGAGCTCAAGGAGATTGGAGAGGGTATTAGCAACATGTACAGAAGAGGGGGAGAAGCCAAGCATGTGCATCGCCATGGAAAATCACACATTGCACCAGAATGTTCcttaccatcatcatcatcatcatcatcatcttcatcatcatcacagAGCCAGTGGGCTAACTTGCCACCTGAGTTGCTATTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACTTCCTGGCCTGCACGTAGAGCACTTGTGGCATGTGCCTCAGTTTGTAGGTTGTGGAGAGAGATAACAAAGGATGTGGTCAAGACACCAGAACAGTGTGGTTTGCTCACTTTCCCCATATCACTAAAGCAGCCTGGTCCAAGAGACTCTCCAATCCAGTGTTTTATTAGAAGAGAAAGGATGACTTCAACATATTGTTTATACCTCGGTCTGAGCCCTGCTCTTTCTGGTGATAAGAGCAAACTGTTACTGGCAGCAAAGAAGATTAGAAGGGCAATGTGTAcagaatttttaatatcattggTTGCTGATGATTTCTCTCGGGCGAGCAACACTTATATTGGAAAGCTGAGGTTAGTCTCACATCTCTCTGCTCCTTATCTTTATGACTGA 633 0.4092 MPFRGIVRELKEIGEGISNMYRRGGEAKHVHRHGKSHIAPECSLPSSSSSSSSSSSSQSQWANLPPELLLDIIQRLEASETSWPARRALVACASVCRLWREITKDVVKTPEQCGLLTFPISLKQPGPRDSPIQCFIRRERMTSTYCLYLGLSPALSGDKSKLLLAAKKIRRAMCTEFLISLVADDFSRASNTYIGKLRLVSHLSAPYLYD 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0135 210 Gene3D - 54 107 - -
Ssu5g0135 210 Pfam F-box domain 61 108 IPR001810 GO:0005515
Ssu5g0135 210 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 198 - -
Ssu5g0135 210 SUPERFAMILY F-box domain 57 105 IPR036047 GO:0005515
Ssu5g0135 210 MobiDBLite consensus disorder prediction 41 60 - -
Ssu5g0135 210 MobiDBLite consensus disorder prediction 26 60 - -
Ssu5g0135 210 Pfam Tub family 122 198 IPR000007 -
Ssu5g0135 210 Gene3D Tubby Protein; Chain A 118 205 IPR025659 -
Ssu5g0135 210 PANTHER TUBBY-RELATED 1 198 - -
Ssu5g0135 210 SUPERFAMILY Tubby C-terminal domain-like 110 199 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0135 Ssu-Chr5 2822765 2824681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0135 28 198 TUB Transcription Factor Family AT1G47270 66.082 2.02e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Ssu5g0135 Tub 4.1e-22 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0135 K19600 - gmx:100796250 360.147