Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0126 ATGAAGCTTGGTTTCTTTCTGGTTTTTCTAGTTCTCTATATGATACCAGAACAAGGGATCTTATTACCCCAAGTAGAAGCTGATGATGATGGGTTTGTGAAAGTAAAAGGGGTGCAGCTTATGTTGAATGGGAGCCCCTATTATGCTAATGGTTATAATGCCTATTGGTTAATGTATATGGCCTCTGATCCATCTGAGAGAAACAAGGTTTCATCTGCGTTTCAAGAGGCTGCAAATCATGGACTTAACATAGCCAGGACATGGGCTTTCAGTGATGGTGGATATAAGCCCCTACAATACTCTCCTGGATCCTACAATGAGGACATGTTCCTGGGGCTGGACTTCGTAATATCTGAAGCCAGAAGGTATGGGACCAAGCTAGTGTTGAGTTTGGTGAACAACTATGATGACTTTGGAGGAAAGAAACAATACGTGGACTGGGCAAGGAGTCAGGGCCAGTCTGTAAATTCTGAAGATGATTTCTTCACAAACCCTGTAGTGAAGGGATACTACAAAAACCACATCAAGAGTGTACTCACAAGACATAATAACTTCACTGGAGTTGTTTACAAAGACGATCCAACTATAATGGCTTGGGAACTCATGAATGAAATTAGATGCCCGTCAGATCAATCAGGAAACACGGTTCAGGCTTGGATTACTGAGATGGCATCTTACTTGAAATCCATAGATGGAAACCATTTACTAGAAGCTGGTCTGGAGGGCTTCTATGGGCAGTCCAAGCAAGAGTCTAATCCCAGCTTCCACGTCGGAACAGATTTCATTGCAAACAACCAAAGCCCTGGCATTGATTTTGCCACAGTTCATTCGTACCCTGATCAATGGCTACCAGGTTCAAGTAATGAAGACCAAATCTCATTTTTGGGTCGTTGGCTCAGTGATCACATACAAGATGCACACAACATTCAGAAGCCAGTTCTCTTTGCGGAGTTTGGGGtatcaacaaaaaatatcagTACTGATTCAACATTGAGGGACGAATTTTTCAACATGGTCTATTCTGCAATCTATTCATCAGCAAGTGATAGCGGTGCGGCAGTTGGTGGCTTATTTTGGCAACTTCTAGCAGAAGGAATGGATTCTTTTCGAGATGGTTATGAAGTACCATTAGATGAGAGCTCCTCAACTGCTACTTTGATTGCCCAAGAGTCTGAAAAGCTAAACAGAATCCGGATGAAGATATTCCCGAGAGTGAAAAATTCTAAGCAGTGGAATAAAGCAAGGGAAGTTAGAAGATCACAATGGCAGGGTGGTGCTAATGAAAGAAACTGA 1293 0.42 MKLGFFLVFLVLYMIPEQGILLPQVEADDDGFVKVKGVQLMLNGSPYYANGYNAYWLMYMASDPSERNKVSSAFQEAANHGLNIARTWAFSDGGYKPLQYSPGSYNEDMFLGLDFVISEARRYGTKLVLSLVNNYDDFGGKKQYVDWARSQGQSVNSEDDFFTNPVVKGYYKNHIKSVLTRHNNFTGVVYKDDPTIMAWELMNEIRCPSDQSGNTVQAWITEMASYLKSIDGNHLLEAGLEGFYGQSKQESNPSFHVGTDFIANNQSPGIDFATVHSYPDQWLPGSSNEDQISFLGRWLSDHIQDAHNIQKPVLFAEFGVSTKNISTDSTLRDEFFNMVYSAIYSSASDSGAAVGGLFWQLLAEGMDSFRDGYEVPLDESSSTATLIAQESEKLNRIRMKIFPRVKNSKQWNKAREVRRSQWQGGANERN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0126 430 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE-LIKE PROTEIN 5 419 - -
Ssu5g0126 430 Gene3D Glycosidases 28 398 - -
Ssu5g0126 430 PANTHER - 5 419 IPR045053 GO:0004553
Ssu5g0126 430 SUPERFAMILY (Trans)glycosidases 32 386 IPR017853 -
Ssu5g0126 430 Pfam Cellulase (glycosyl hydrolase family 5) 50 334 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0126 Ssu-Chr5 2594092 2598818 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0126 31 415 Glycoside Hydrolase AT5G66460 65.553 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0126 K19355 - gmx:100799790 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0126 5 2594092 2598818 Ssu5g0126 5 2594092 2598818 ECH