Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0117 ATGAAGGAAGCTTCTAGAAATTATCTTCACTCAGAATCTACAACAACCCTTGTTTTGGTAGCGGATGATAAAATTTTGGTTGCCAATATCGGAGACTCTATGGCCATCTTGAGCTCTGAAAATTTTCAGTCTCCCAGAGAGGCAAAAGGTGAATATTGGAATGGAGATTGCGCAGTGTTTGGTCATGGTGTGCAATTTGCACCAATAGGATTGCTTGACATGTACAATTCGGGAGGATTGCTTGACATGCACGATGTGAAATACAATAGGATTGCACCAATAGGGTCATGTTCTTGCAGGTGGTGGTGGTCAATATAA 318 0.4151 MKEASRNYLHSESTTTLVLVADDKILVANIGDSMAILSSENFQSPREAKGEYWNGDCAVFGHGVQFAPIGLLDMYNSGGLLDMHDVKYNRIAPIGSCSCRWWWSI 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0117 105 Gene3D - 1 59 IPR036457 -
Ssu5g0117 105 Pfam Protein phosphatase 2C 7 41 IPR001932 -
Ssu5g0117 105 SUPERFAMILY PP2C-like 7 42 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0117 Ssu-Chr5 2457434 2458213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0117 2 50 PP2C-type Phosphatase Gene Family AT3G63320 55.102 1.21e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0117 - - gmx:100781476 78.9517