Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0116 atgtcaaaatctaTGGAACTCCCAGATTGTGTATATCATAGGCCACCACTTACCATTTCCCCCTGTGCTCCAACGCCAAAGCattctctctatctatctaatCTTGACGACCAAAGGCTCCTCAGATTCTCTGTTAAGTATTTGTTCCTCTTCAAGAAATCTGTGAGCCTGGATGTGTTCAAGTCTTCTCTGTCCAGAGTTTTGGTGGATTACTACCCCTTAGCTGGGAGGTTGAGGAGCAGCATTTGTGAGGATGATCACAAGCTTGTGGTGGATTGCAATGGAGAAGGTGCTGTGTTTGCTGAGGCTTTCATGGATGCCACCGTTGAAGAATTACTTGAACCTTCCATGGTGCCAAACGATTCATGGAGGAAGCTCTTGTACAAGGTGGAAGCTCAAAGTTACATAGATGTTCCACCTCTTGTAATCCAGGTGACGAGTCTCCGTTGCGGAGGGATGATCCTATGCACGGCGGTCAACCACTGCCTATGCGACGGCATTGGCACGTCACAATTTTTACACGCTTGGGCCCAGCTCACCAGAGAGCCCGACACCGAATTGACAATCGTACCCTTCCACGGGCGACACGTGTTAAAACCTCGAGAGCCCCCGCAGGTGCACTTCTTTCACCCGACGTACACCAAAACAAACCCCATCTCTGAAGTGGACCTGCACAAGTGGACGATGCAGTCGCAGCTGGTTGCCACGTCGTTCATATTTGGACCCTCCGAAGTGCTTCGCTTGAAGAAACGGTGTGTGCCGTCGCTGAAGTGCATCACCACCTTCGAAGCCGTGGCGACACACACGTGGTGCGCGTGGGTTAAATTTCTAAACTTGGCCCCCATGCAAACTGTTAAGCTCCTTTTTAGCGTTAACGTTAGGAAAAAGATTAACCTCCCCGAAGGGTATTATGGGAATGGGTTCGTTTTAGCGTGCGCGAAGAGCAGGGTGGGGGATTTAGTAGCGGTTAATAACAACCTGCGTCACGGTTTGAAATTGGTACAAGAAGCTAAGTCTAGTTTGGATGATGGGTATATAAGGTCGATGGTTGATTTGTTGGAGGACAAAACGGTGCGTGTTGATCTTTCTACGAGTTTGGTTATGACGCACTGGTCTAGGCTAGGGTTGGATGATGTGGATTTCGGAGAAGGGAAGCCTTTGTATATAGGTCCTTTAACAAGCGCttatttttgctttcttttaccAGTTGTTGGGGATGCTAATGCGGTGAGAGTGCTCTTGTCGGTGCCGGAGAGTGTGGTTGAAAGTTTTCGTTATTACATGGTGGTGAAGGAGAGTTAg 1302 0.4731 MSKSMELPDCVYHRPPLTISPCAPTPKHSLYLSNLDDQRLLRFSVKYLFLFKKSVSLDVFKSSLSRVLVDYYPLAGRLRSSICEDDHKLVVDCNGEGAVFAEAFMDATVEELLEPSMVPNDSWRKLLYKVEAQSYIDVPPLVIQVTSLRCGGMILCTAVNHCLCDGIGTSQFLHAWAQLTREPDTELTIVPFHGRHVLKPREPPQVHFFHPTYTKTNPISEVDLHKWTMQSQLVATSFIFGPSEVLRLKKRCVPSLKCITTFEAVATHTWCAWVKFLNLAPMQTVKLLFSVNVRKKINLPEGYYGNGFVLACAKSRVGDLVAVNNNLRHGLKLVQEAKSSLDDGYIRSMVDLLEDKTVRVDLSTSLVMTHWSRLGLDDVDFGEGKPLYIGPLTSAYFCFLLPVVGDANAVRVLLSVPESVVESFRYYMVVKES 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0116 433 PANTHER BNAC03G58010D PROTEIN 14 429 - -
Ssu5g0116 433 Pfam Transferase family 18 425 - -
Ssu5g0116 433 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 14 429 - -
Ssu5g0116 433 Gene3D - 11 214 IPR023213 -
Ssu5g0116 433 Gene3D - 215 428 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0116 Ssu-Chr5 2447642 2450852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0116 19 428 Monolignol Biosynthesis Gene Families AT5G48930 28.829 7.51e-48 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0116 - - gmx:100797134 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0116 5 2447642 2450852 Ssu5g0116 5 2447642 2450852 ECH