Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0099 ATGGACGTTGATCCTCGCCAATACGAACAAATTGctataaatgaaaaagatgtcCACAACATCATCCTGTCATATCTTATACATAACTGCTACAAAGAGTCGTCAGAGTCATTCATTGCTTGCACTGGGATGAAGCAGCCTACAGATCATTTGGAGAtcatggaaaaaagaaaaagAATCTTTCACCATGCATTGGAGGGAAATGCACTTAAGGCTATTGAGCTCACTGAACAGCTGGCACAGGATATTCTAGAGAACAATAAGGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCCAGGAAATGGACAGAAGCTTTGGAGTTTGCTCAGACCAAGCTGAGTCCTTTTGGGAAGGAGcaaaaatatatggaaaaaattGAAGATTTTTTGGCCCTTCTTGCTTATGAGGATCCAGTGAAATCCCCAATGTTTCATCTGATTAGCTTAGATTATCGGCAACAGGTTGCGGATAGTTTGAATCGAACTATTCTCGCATGCTTTAACCTTCCCAGCCACACAGCCATGGAGCGGCTTATACAGCAATCCTCAGTAGTTAGACAATACTTAAGCCAGGAGGATGGGCCTTCACCATTTTCCTTAAAGGATTTTCTTAAAAGTCGAtga 642 0.3879 MDVDPRQYEQIAINEKDVHNIILSYLIHNCYKESSESFIACTGMKQPTDHLEIMEKRKRIFHHALEGNALKAIELTEQLAQDILENNKDLLFDLLSLHFVDLVCSRKWTEALEFAQTKLSPFGKEQKYMEKIEDFLALLAYEDPVKSPMFHLISLDYRQQVADSLNRTILACFNLPSHTAMERLIQQSSVVRQYLSQEDGPSPFSLKDFLKSR 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0099 213 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 53 110 IPR006595 -
Ssu5g0099 213 PANTHER RAN BINDING PROTEIN 9-RELATED 12 211 - -
Ssu5g0099 213 Pfam CTLH/CRA C-terminal to LisH motif domain 54 193 IPR024964 -
Ssu5g0099 213 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Ssu5g0099 213 SMART toby_final6 106 201 IPR013144 -
Ssu5g0099 213 SMART ctlh 53 110 IPR006595 -
Ssu5g0099 213 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 30 12 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0099 Ssu-Chr5 2209463 2212136 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0099 K23338 - gmx:100813665 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0099 5 2209463 2212136 Ssu1g3926 1 97296609 97298976 PCT