Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0056 ATGGATCGCCCAACACTATCATTGTTTTCATTCTTACTAACACTTCATATATCAGTATCAGGGGTAATTTCAACGACATTCACTCTAGTTAACAAGTGTGACTACACGGTGTGGCCGGGCATTCTCTCCAACGCCGGTGTTCCTCCGCTTTCAACCACCGGCTTTGTTCTCCAAACCGGCGAGTCAAGCACAATAACCGCACCCACCTCATGGGGTGGCCGTTTCTGGGGCCGAACGCTCTGCTCCGAAGACTCCACCGGCAAGTTCTCGTGCGTCACCGGCGACTGCGGCTCCGGCAAGCTCGAGTGCGCCGGCAACGGGGCCATCCCGCCGGCCACCTTGGCGGAGTTCACCCTCGACGGCGCCGGAGGCCTCGACTTCTTCGACGTGAGCCTGGTCGACGGCTACAACGTGGCCATGCTGGTGGTCCCGCAAGGAGGCTCCGGCGACAACTGCACAGCCACCGGGTGCGTCGGCGACCTCAACGGCCCGTGCCCTTCGGAGCTCAAGGTGATGAGCGCGGACGGGAGAGAGGGCGTCGCGTGCAAGAGCGCGTGCGAGGCCTTCAACTCGCCGCAGTATTGCTGCAGTGGCGCGTTTGGCACGCCCGACACGTGCAAGCCTTCCTCTTACTCGCAGATATTCAAGAAAGCTTGCCCACGCGCGTATAGCTACGCATACGACGACAAGACCAGCACCTTCACTTGCGCTTCCGCTGATTACACCATCACATTTTGCCCTCCACCTGCCACCAGtcaGAAGGCGTCACAGGGGCAAGATAGTTCTTCTACCTCGCCCTTGCTCAACAACAGCACGATGGTGTATGAAGGTGCATTTGATCAGAGTGAACTGTCGTGGGCCACGTGTAGCCACGTGCTCCAATCCCGAGCTATTGCCGGCATTGTTAGTGTCTCGATGGCTATGTGGCGGTTGTGCCAGCTCTTCTAA 948 0.5844 MDRPTLSLFSFLLTLHISVSGVISTTFTLVNKCDYTVWPGILSNAGVPPLSTTGFVLQTGESSTITAPTSWGGRFWGRTLCSEDSTGKFSCVTGDCGSGKLECAGNGAIPPATLAEFTLDGAGGLDFFDVSLVDGYNVAMLVVPQGGSGDNCTATGCVGDLNGPCPSELKVMSADGREGVACKSACEAFNSPQYCCSGAFGTPDTCKPSSYSQIFKKACPRAYSYAYDDKTSTFTCASADYTITFCPPPATSQKASQGQDSSSTSPLLNNSTMVYEGAFDQSELSWATCSHVLQSRAIAGIVSVSMAMWRLCQLF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0056 315 PANTHER BNAA02G17480D PROTEIN 11 272 - -
Ssu5g0056 315 CDD TLP-PA 26 246 - -
Ssu5g0056 315 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Ssu5g0056 315 PANTHER OS03G0233200 PROTEIN 11 272 IPR001938 -
Ssu5g0056 315 Gene3D Thaumatin 25 247 IPR037176 -
Ssu5g0056 315 PIRSF PR5 2 285 IPR001938 -
Ssu5g0056 315 SUPERFAMILY Osmotin, thaumatin-like protein 25 248 IPR037176 -
Ssu5g0056 315 SMART tha2 27 247 IPR001938 -
Ssu5g0056 315 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Ssu5g0056 315 Pfam Thaumatin family 31 247 IPR001938 -
Ssu5g0056 315 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Ssu5g0056 315 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Ssu5g0056 315 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Ssu5g0056 315 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0056 Ssu-Chr5 1047330 1050412 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0056 5 252 Receptor kinase-like Gene Family AT5G38280 55.777 1.07e-92 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0056 - - gmx:100787631 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0056 5 1047330 1050412 Ssu5g0056 5 1047330 1050412 ECH