Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0049 ATGGCAGAAGTGGAACTAGCCCCGGATTCTCGTATAGGACAACAAGGTGTAACATCTAAAAGGGACCAACCAACCAAACCGGAGAGTGTTTCGTTTTCTGGGTTGTTTGCCACGGCTGATGCAACTGACTTTGTCTTAATGTTCCTCGGAAGTGTCGGTTCGTGTGTCCATGGTGCTGCTCTTCctgttttcttcattttgttcgGCCGCATGATTGATTCTTTGGGACATCTTTCTAATAACCCTCACAAGTTGTCCTCGCGAATTTCCGAGTATGCTTTGTATTTGGTCTATCTTGGAGGAGTTGTTCTGGTATCGGCTTGGATGGGTGTCGCATTCTGGATGCAAACAGGGGAGAGGCAAACGGCACGTTTGCGCTTGAAATATTTGCAGGCAGTGCTAAAAAAGGATATTAATTTCTTTGACAATGAAGCCAGGGATGCTAATATTATTTACCACATCTCTAGTGACGCAATATTAGTACAAGATGCAATTGGTGACAAGACAGGCCATGCAATTCGTTACCTTTCTCAATTCATTGTTGGATTTGCCATTGGATTTACGTCAGTGTGGCAGCTCACACTACTCACCTTGGCTGTGGTTCCATTGATAGCTGTAGCTGGGGGGGCTTATACAGTAATCATGTCTACTTTATCAGAAAAGGGTGAAGCAGCTTATGCTGAAGCTGGGAAGGTTGCAGAAGAGGTGATATCTCAAGTGCGTACTGTTTACTCATTTGTAGGAGAAGAGAAAGCGGTTGGTTCATACTCTAAGTCTCTTGATAATGCTCTGAAGTTGGGCAAGAAGAGTGGTTTTGCAAAAGGAGTTGGAGTAGGCTTCACATATGGGTTGTTATTTTGTGCTTGGGCATTGCTTCTTTGGTATGCCAGCATACTTGTGAGGCATCATAAGACAAATGGAGGCAAAGCGTTcacaacaattatcaatgtCATCTTTAGTGGATTTGCTCTTGGTCAAGCTGCTCCAAACCTTGGTTCCATTGCTAAAGGGCGTGCTGCTGCAGCCAATATCATGAACATGATTGCATCTGCTTCAAGCAATTCTAAAAGGTTGGATGATGGCACAACAGTGCCACAAGTTGCGGGGGAAATTGAATTTTGTGAGGTCTGCTTTGCTTACCCCTCAAGATCCAATATGATCTTTGAAAATTTGAGCTTCACAGTGAGTGCTGGGAAGACTGTAGCAGTTGTTGGTCCAAGTGGTTCCGGAAAGAGCACCATCGTTTCCCTTATTCAACGGTTCTATGACCCCACTTCAGGTAAGATCCTGTTGGATGGATATGACCTAAAGATTCTTCAATTGAAATGGTTGAGAGAACAGATGGGCTTGGTTAGTCAAGAACCAGCACTATTTGCCACAACAATAGctggaaatattttatttggaaaagAAGATGCAGACATGGATAAAGTCATACAAGCTGCCATGGCTGCAAATgctcattcattcattcaaggATTACCTGATGGTTATCAAACTCAGgTTGGAGAGGGTGGCACCCAACTTTCAGGGGGGCAAAAGCAAAGAATCGCCATAGCAAGAGCAGTGCTCAGAAACCCAAAAGTATTGCTTTTAGATGAGGCCACAAGTGCTCTAGATGCTGAATCAGAGCTCATTGTCCAACAGGCATTggaaaaaataatgtcaaaccGGACAACAATAGTTGTTGCTCATCGATTATCCACCATACGTGATGTAGATACAATTGTTGTGTTGAAGAACGGCCAGGTGGTTGAAAGTGGGACTCATTTGGAATTGATGTCCAACAATGGAGAGTATGTGAATCTGGTGAGTTTGCAGGCATCACAAAACCCCACAGAATCTAGATCAATATCTCGCTCTGAAAGTTCAAGACATTCTAGTTTTAGAGAACCTTCAGTCAACTTGACCTTAGAGGAGCAGTTGAAGTTGGACACAGCAGCTGAACTGCAATCAAGTGATCAACACTTGCCATCAAAGGCTACTTCTGTTCCATCAATTATGGATTTACTGAAACTGAATGCTCCGGAGTGGCCCTATGCAATACTTGGGTCAGTAGGTGCAGTTATGGCTGGCATGGAAGCCCCTCTCTTTGCACTTGGAATCACTCACATTTTGACTGCATTTTATTCTCCTCAGGGTTCTAAAATCAAGCAAGAAGTTGATCGGGTTGCTTTTATATTTGTTGGAGTGGCTGTTATTACTATACCTATTTATCTATTGCAACACTACTATTATACATTGATGGGAGAGCGTCTCACTGCCCGTGTGCGTTTATTAATGTTCTCAGCTATTCTCAACAATGAAATTGCATGGTTTGATATGGATGAGAACAACACTGGCTCACTAACAGCAATGCTTGCTGCGGATGCAACATTAGTAAGAAGTGCTCTAGCAGACAGACTCTCAACCATAGTGCAAAATGTAGCTCTCACTGTAACAGCTTTTGTTATTGCCTTCACATTGAGTTGGAAACTAACAGCAGTGGTCGTAGCCTGCCTTCCCCTTCTCATAGGAGCTTCTATCACTGAGCAACTATTTCTCAAGGGGTTTGGAGGAGATTATGGCCATGCTTACTCTAATGCAACTTCTCTGGCTCGTGAAGCTATTGCCAACATACGAACCGTTGCTGCTTTTGGAGCAGAAGATCGAATCTCAATCCAGTTTGCATCTGAATTGAACAAACCTAACAAACAAGCACTCGTACGGGGCCACATATCAGGTTTTGGCTATGGCGTAACGCAGCTGTTGGCTTTCTGCTCCTATGCACTTGGCCTTTGGTATGCATCAATTTTAATCAAGAAGAAAGAGTCAAATTTTGGAGACATCATGAAGTCCTTCATGGTCTTAATAATCACTGCTCTGGCAATAGCAGAAACACTGGCTCTCACCCCGGACATTGTGAAGGGATCACAAGCACTGGGATCAGTTTTTGGCATTCTCCAAAGGAGAACAGCCATCACCCCAGATGACCCCAACTCAAAGATGGTAACTGATGTCAAAGGAGAGATAGAGTTTAGGAATGTTTCCTTCAAGTACCCTATGAGACCTGATATCACCATATTTCAGAACTTAAACCTCAGAGTCTCAGCAGGTAAGAGCCTGGCAGTAGTAGGCCAAAGTGGTTCAGGGAAAAGCACAGTGATTGGTTTGGTAATGAGATTTTATGACCCCACTTCCGGGACAGTCCTGATAGATGAATGTGATATCAAAAGCCTAAACCTGAGATCCTTAAGGCTGAGAGTAGGATTGGTTCAACAAGAACCTGCTTTGTTCTCTACCACTGTTTATGAAAACATCAAGTATGGAAAAGAGGAGGCATCAGAAATAGAGGTAGTGAAGGCAGCCAAAGCAGCAAATGCTCATGAATTCATCAGCAGAATGCCAGAAGGGTACAAAACTGAGGTTGGTGAGAGAGGGGTGCAGTTATCAGGAGGACAAAAACAAAGAGTGGCAATTGCTAGAGCTATTCTAAAAGATCCATCCATTCTTCTGTTGGATGAAGCAACAAGTGCACTAGACACAGTGTCAGAGAGGCTGGTCCAAGAGGCTCTTGATAGACTTATGGAAGGTAGAACAACAATTTTGGTAGCTCACAGGCTATCAACTGTTCGTGATGCAGACAGCATCGCAGTGCTGCAAAATGGGAGGGTTGCTGAAATGGGAAGCCATGAGAGGCTCATGGCTAAACCCGGGAGCATCTACAAGCAATTGGTTAGTCTTCAGCAAGAAACGCGTGATCAACAAGACCATTGA 3756 0.4281 MAEVELAPDSRIGQQGVTSKRDQPTKPESVSFSGLFATADATDFVLMFLGSVGSCVHGAALPVFFILFGRMIDSLGHLSNNPHKLSSRISEYALYLVYLGGVVLVSAWMGVAFWMQTGERQTARLRLKYLQAVLKKDINFFDNEARDANIIYHISSDAILVQDAIGDKTGHAIRYLSQFIVGFAIGFTSVWQLTLLTLAVVPLIAVAGGAYTVIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAVGSYSKSLDNALKLGKKSGFAKGVGVGFTYGLLFCAWALLLWYASILVRHHKTNGGKAFTTIINVIFSGFALGQAAPNLGSIAKGRAAAANIMNMIASASSNSKRLDDGTTVPQVAGEIEFCEVCFAYPSRSNMIFENLSFTVSAGKTVAVVGPSGSGKSTIVSLIQRFYDPTSGKILLDGYDLKILQLKWLREQMGLVSQEPALFATTIAGNILFGKEDADMDKVIQAAMAANAHSFIQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKVLLLDEATSALDAESELIVQQALEKIMSNRTTIVVAHRLSTIRDVDTIVVLKNGQVVESGTHLELMSNNGEYVNLVSLQASQNPTESRSISRSESSRHSSFREPSVNLTLEEQLKLDTAAELQSSDQHLPSKATSVPSIMDLLKLNAPEWPYAILGSVGAVMAGMEAPLFALGITHILTAFYSPQGSKIKQEVDRVAFIFVGVAVITIPIYLLQHYYYTLMGERLTARVRLLMFSAILNNEIAWFDMDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIAFTLSWKLTAVVVACLPLLIGASITEQLFLKGFGGDYGHAYSNATSLAREAIANIRTVAAFGAEDRISIQFASELNKPNKQALVRGHISGFGYGVTQLLAFCSYALGLWYASILIKKKESNFGDIMKSFMVLIITALAIAETLALTPDIVKGSQALGSVFGILQRRTAITPDDPNSKMVTDVKGEIEFRNVSFKYPMRPDITIFQNLNLRVSAGKSLAVVGQSGSGKSTVIGLVMRFYDPTSGTVLIDECDIKSLNLRSLRLRVGLVQQEPALFSTTVYENIKYGKEEASEIEVVKAAKAANAHEFISRMPEGYKTEVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTVSERLVQEALDRLMEGRTTILVAHRLSTVRDADSIAVLQNGRVAEMGSHERLMAKPGSIYKQLVSLQQETRDQQDH 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0049 1251 Pfam ABC transporter 389 537 IPR003439 GO:0005524
Ssu5g0049 1251 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524
Ssu5g0049 1251 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 30 472 - -
Ssu5g0049 1251 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 549 1242 - -
Ssu5g0049 1251 Gene3D - 994 1251 IPR027417 -
Ssu5g0049 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 682 969 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0049 1251 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 549 1242 IPR039421 -
Ssu5g0049 1251 SMART AAA_5 397 583 IPR003593 -
Ssu5g0049 1251 SMART AAA_5 1031 1217 IPR003593 -
Ssu5g0049 1251 SUPERFAMILY ABC transporter transmembrane region 670 982 IPR036640 GO:0005524|GO:0016021
Ssu5g0049 1251 MobiDBLite consensus disorder prediction 12 27 - -
Ssu5g0049 1251 Pfam ABC transporter 1023 1171 IPR003439 GO:0005524
Ssu5g0049 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1242 IPR027417 -
Ssu5g0049 1251 Pfam ABC transporter transmembrane region 683 955 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0049 1251 Pfam ABC transporter transmembrane region 48 320 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0049 1251 MobiDBLite consensus disorder prediction 1 27 - -
Ssu5g0049 1251 CDD ABC_MTABC3_MDL1_MDL2 1004 1242 - -
Ssu5g0049 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0049 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1004 1240 IPR003439 GO:0005524
Ssu5g0049 1251 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 453 567 - -
Ssu5g0049 1251 MobiDBLite consensus disorder prediction 612 633 - -
Ssu5g0049 1251 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 344 - -
Ssu5g0049 1251 CDD ABC_MTABC3_MDL1_MDL2 371 607 - -
Ssu5g0049 1251 CDD ABC_6TM_Pgp_ABCB1_D2_like 671 987 - -
Ssu5g0049 1251 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 30 472 IPR039421 -
Ssu5g0049 1251 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 453 567 IPR039421 -
Ssu5g0049 1251 Gene3D - 361 608 IPR027417 -
Ssu5g0049 1251 SUPERFAMILY ABC transporter transmembrane region 35 344 IPR036640 GO:0005524|GO:0016021
Ssu5g0049 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 607 IPR027417 -
Ssu5g0049 1251 Gene3D ABC transporter type 1, transmembrane domain 35 973 IPR036640 GO:0005524|GO:0016021
Ssu5g0049 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 606 IPR003439 GO:0005524
Ssu5g0049 1251 ProSitePatterns ABC transporters family signature. 1143 1157 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0049 Ssu-Chr5 921178 926219 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0049 22 1248 Calmodulin-binding Proteins AT2G36910 49.681 0.0 1228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0049 K05658 - gmx:100787093 2234.53