Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0043 ATGGATAcgagcaacaacaacaacaacttgaAAACAGCAGCTCGGTGCAATTCCCCACCTTATGGCAAAGATTTTAAGGGAAGGATCCCTACTGGCCGATTTGGCAATGGAAAGGTTCCATCAGACCTTCTACTCGAAGAATTAGGCATAAAAGAGTTTCTACCAGCGTACTTGGATCCAAATCTTCGGCTTAGTGATTTAGCCACCGGTGTGTGTTTTGCATCGGGGGGGTGCCAGATACGATCCTTTGACATCACAAGTTGCGCTATATCACTATCGGGTCAACTAGACATGTTCAAAGAATACATAGTGAAGCTAAAAGGACTCGTTGGAGAGGACACAACAAACTTCATCCTAGGCAACAGTCTTTTCTTTGTCGTTTTAGGCAGCAATGACGTTTCCAACGCATACTTTTTGACCCATCTCAGAGAACTGCAATATGATGTTCCGGCTTACGCTGAACTTATGGTTAACTCAGCTTCTAATTTCTTCAAGGAAATATATCAACTAGGTGCACGGAGGATTGCAGTATTTAGTGCGCCGCCAATTGGGTGTGTGCCGTTTCACAGAACATTGACCGGTGGAATAGCAAGAAAATGTGTACAGAAGTACAACAATGCAGTGGTGTTATTTAACGACAAACTGTCCAAGGAGATAGATTCTCTTAATCAGAACCTTCCAGACAGCAGGATTGTTTACTTCGATGTGTACAACCCCTTGCTTGATATCATTGTAAACTACCAAAAATATGGCTACAAAGTTGGAGACAGAGGGTGTTGTGGCACAGGCAAACTAGAGGTTGCATTGTTATGCAACCATTTGGAACCCACATGTCCCAACGTCTTGGATTATGTGTTTTGGGACAGTTTTCACCCTACTGAAAGCGTTTACAAAAAGCTTGTGCCTCCTATTCTACAGAAATATATACACCAGTTTGACTCTCCCGTTGCCTCATTGCTCCGTTTCATAGTAATATTTGCTTTATGGTACAGAACGAATGCTTTGTTGAAGCTGCCACCAAACGTTTCAGCTCCAGCAGTCTTAGCGTTTGGAGATTCGATCGTGGACTCAGGCAACAACAATGACATAAAAACATTGGTCAAGTGCAATTTCCCACCTTATGGAAAAGATTTTCAGGGAGGAAACCCAACGGGTCGATTTTGCAATGGAAAAATTCCTACAGACATAATAGTTGAAGAATTGGGAATTAAGGAGTATTTGCCTGCATATTTAGATCCAAACCTCAAATCTAGTGATCTTGTTACTGGCGTCTGCTTTGCCTCAGGTGCCTCAGGATACGATCCTTTGACACCCGAAATAGCgTCAGTTATATCATTATCCACTCAACTAGATATGTTCAAAGAATACATTGGGAAGCTGAAAGGCATTGTTGGAGAGAACAGAACAAACTTCATCCTGGCCAACAGTCTTTACGTTGTGGTGGCAGGCAGTGACGACATTGCCAACACCTATTTCGTAGCTCATGCGAGAATATTACAGTATGACGTTCCTTCGTACACTGACCTTATGGTGAACTCAGCCTCTAATTTTGTAAAGGAACTATATAATCTCGGAGCACGTAGAGTTGCAGTCCTCAGTGCACCACCGATTGGATGCGTGCCATCACAGAGAACTCTGGCTGGAGGGCTAAGAAGACAGTGCTCAGAAAAGTACAATGACGCAGCGAAGTTGTTCAATTCCAAACTGTCAAAGGAACTGGATTCCCTTGGTCACAACTCGCCCAATAGCAGGATAGTTTACATTGATGTTTACAACCCTCTACTCGATATCATTGAAAACTACCAAAAATATGGCTACAAAGTTGTGGACACGGGTTGCTGTGGCACAGGCAAACTAGAGGTTGCAGTGTTATGCAACCCTTTGGATGCCACTTGTTCTAATGCTTCGGAATATGTCTTTTGGGATAGTTATCATCCCACAGAAAGAGTATACAGAAAGATCGTAAATTATGTTCTTGAAAAGTACACGAGTCGATTGTTTTGA 2004 0.4217 MDTSNNNNNLKTAARCNSPPYGKDFKGRIPTGRFGNGKVPSDLLLEELGIKEFLPAYLDPNLRLSDLATGVCFASGGCQIRSFDITSCAISLSGQLDMFKEYIVKLKGLVGEDTTNFILGNSLFFVVLGSNDVSNAYFLTHLRELQYDVPAYAELMVNSASNFFKEIYQLGARRIAVFSAPPIGCVPFHRTLTGGIARKCVQKYNNAVVLFNDKLSKEIDSLNQNLPDSRIVYFDVYNPLLDIIVNYQKYGYKVGDRGCCGTGKLEVALLCNHLEPTCPNVLDYVFWDSFHPTESVYKKLVPPILQKYIHQFDSPVASLLRFIVIFALWYRTNALLKLPPNVSAPAVLAFGDSIVDSGNNNDIKTLVKCNFPPYGKDFQGGNPTGRFCNGKIPTDIIVEELGIKEYLPAYLDPNLKSSDLVTGVCFASGASGYDPLTPEIASVISLSTQLDMFKEYIGKLKGIVGENRTNFILANSLYVVVAGSDDIANTYFVAHARILQYDVPSYTDLMVNSASNFVKELYNLGARRVAVLSAPPIGCVPSQRTLAGGLRRQCSEKYNDAAKLFNSKLSKELDSLGHNSPNSRIVYIDVYNPLLDIIENYQKYGYKVVDTGCCGTGKLEVAVLCNPLDATCSNASEYVFWDSYHPTERVYRKIVNYVLEKYTSRLF 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0043 667 Gene3D SGNH hydrolase 1 308 IPR036514 -
Ssu5g0043 667 Gene3D SGNH hydrolase 340 665 IPR036514 -
Ssu5g0043 667 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 314 665 - -
Ssu5g0043 667 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 4 310 - -
Ssu5g0043 667 MobiDBLite consensus disorder prediction 1 15 - -
Ssu5g0043 667 Pfam GDSL-like Lipase/Acylhydrolase 347 657 IPR001087 GO:0016788
Ssu5g0043 667 Pfam GDSL-like Lipase/Acylhydrolase 10 300 IPR001087 GO:0016788
Ssu5g0043 667 MobiDBLite consensus disorder prediction 1 23 - -
Ssu5g0043 667 CDD SGNH_plant_lipase_like 345 662 IPR035669 -
Ssu5g0043 667 CDD SGNH_plant_lipase_like 6 308 IPR035669 -
Ssu5g0043 667 SUPERFAMILY SGNH hydrolase 122 305 - -
Ssu5g0043 667 PANTHER GDSL ESTERASE/LIPASE EXL3 314 665 - -
Ssu5g0043 667 PANTHER GDSL ESTERASE/LIPASE EXL3 4 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0043 Ssu-Chr5 714025 746812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0043 341 660 Pollen Coat Proteome AT1G75910 40.248 3.07e-74 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0043 - - vvi:100264374 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0043 5 714025 746812 Ssu5g0043 5 714025 746812 ECH
Ssu5g0043 5 714025 746812 Ssu1g3992 1 98659877 98710134 PCT