Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0040 ATGGATAGATTGAGCTTATGGGAGGAGCTGCCTAGTGTTGACGTGGGAGAACACACCGTGTCAGGTAGATCACGGAAAGCATGTGAGGAAGATAGATTGTGTAACAAGCGAAGCGTGAGTGAGGAATATTTTGAAGCATTCAGAACGAAGTCTTACATGGAAATATGCAACAAAGCACAAGGGGGGCTTGAAAAAACAAGCCCCAAAAtactctcttcctcttctccttcttcttctattcCTTTATGCATGCAGCTTACGGAGTACTTGCTTGAGCCACGGCAAGAGATGATAGCAAACATAACGCAGAGGTTGAAGTTGCATCATCTTCTTGTGGACTACTTCGAAGCCAGCTTAGAAGCGTGTCGTTGTTGTGACACAATCCTTGCAGCCATCCATTCAACGCGACTTGCTTATCGACGAATCACACGCATTGTTAAGCTAAGCAAAATGGTGCTTGATGATGCCAACGACCAAACCCACAAGGATACTGTCTATAGAGAACTTGCTTCCTTTGCTTTGCAAAGCAACCCTTTGTCCATTATTAGCCCCGTGCAGTTTCGTGACATTCACGACAGATACGTGGAACTCTTGCATAGACTAAAATCAACGAGGAGGGAAACTCGAAGGAGATTGACATTAAAGAGAGTTTGCAAGAAGGTGGCAGGAATTGCTCTTGTTACTTCACATAGCGTGGTTCTTGTTGCTTTGTTAGTTTTGGCTTGTCATAGCATAGTTGGGTTGGTGGCAGCGCCTAGTATTGTGGGTGGCTTGGTTGGTTTGTTTGTAAAAAGGGCTCGTGAAAGGGTTCGCTCGAGATCTTCTGAGAGGTTGTGTGAGCAACTTGATGTGGCTGCCAAAGGGGTTTATATTCTGATCAATGACTTGGACACTATGAGTAGGATGGTGAAGAGGTTGCATGACGAGGTGGAGCATATGAAAGTGATGGCTGGTGTTTGTGTGAGGAATGGGAAGTATGAGATACTGAAGCAGGTTATGAGGGAATTTCATGAGCATGAGTCTAGCTTTCTGGAGCAGTTGGAAGAGCTTGAGGGACATATCTACTTGTGCTTTCTCACCACAAACAGATCCAGGAGGCTTCTTGTGCAACAAATTctggagaaagaaaaatattga 1137 0.4301 MDRLSLWEELPSVDVGEHTVSGRSRKACEEDRLCNKRSVSEEYFEAFRTKSYMEICNKAQGGLEKTSPKILSSSSPSSSIPLCMQLTEYLLEPRQEMIANITQRLKLHHLLVDYFEASLEACRCCDTILAAIHSTRLAYRRITRIVKLSKMVLDDANDQTHKDTVYRELASFALQSNPLSIISPVQFRDIHDRYVELLHRLKSTRRETRRRLTLKRVCKKVAGIALVTSHSVVLVALLVLACHSIVGLVAAPSIVGGLVGLFVKRARERVRSRSSERLCEQLDVAAKGVYILINDLDTMSRMVKRLHDEVEHMKVMAGVCVRNGKYEILKQVMREFHEHESSFLEQLEELEGHIYLCFLTTNRSRRLLVQQILEKEKY 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0040 378 Pfam Protein of unknown function (DUF677) 80 372 IPR007749 -
Ssu5g0040 378 PANTHER UPF0496 PROTEIN 2-RELATED 24 376 - -
Ssu5g0040 378 PANTHER UPF0496 PROTEIN 3-RELATED 24 376 IPR007749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0040 Ssu-Chr5 612114 613946 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0040 - - gmx:100790505 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0040 5 612114 613946 Ssu5g0040 5 612114 613946 ECH