Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0039 ATGGCAGCTATTGCCACAGTGATGCTCATAACTATATCCATCGCTTCTCTTGTGAGTGCACTAAATGTAAATTACTATGAAAATACATGCCCTCAGGCTGAGTCCATCGTAGCTGCTGCTGTTCACAAAGCAACCATGAATGACAAAACTGTCCCAGCTGCTCTCCTTCGGATGCATTTTCATGATTGCTTCATAAGGggttgTGATGCCTCTGTTCTTCTGGAATCAAAGGGGAAGAATCAAGCAGAAAAGGATGGACCTCCTAACATTTCTTTGCATGCATTCTATGTCATTGACAACGCTAAGAAAGCAGTGGAAGCCGTTTGCCCCGGGGTCGTATCTTGTGCTGATATTTTGGCTCTTGCTGCTAGGGACGCTGTTACCCTGTCCGGAGGGCCCACTTGGGATGTaccaaaaggaagaaaggatgGAAGAACATCAAAGGCCACTGAAACCAGACAATTGCCAGCTCCCACCTTCAACATCTCACAATTACAACAAAGCTTCTCTCAAAGAGGCCTTTCCTTGGAAGATCTAGTAGCCCTCTCAGGAGGTCACACACTCGGGTTCGCTCATTGTTCATCCTTCCAGAACAGAATCCGTAACTTCAGCCCCAAACAAGACATTGACCCGTCCCTGAACCCTTCATTCGCAAGCAGCCTCCGAAGCATATGCCCCTCTCACAACAAGGTTAAAAATGCAGGGGCCCCATTGGATTCTAGTTCCACTTTGTTTGACAATGCTTATTACAAGTCACTCCTTCAAGGAAAGAGCATATTCTCTTCTGATCTGGCTCTGCTCACTCATCCCACCACCATAGCTTTGGTTTCCAAGTTTGCTCATTCACAAGAGGAATTTGAAAGGGCCTTCGTCAAGTCCATGATCAAGATGAGCAGCATCACCAACGGTGGACAAGAAATCAGGCTCAATTGTAAATGCGTTAGATGA 948 0.4515 MAAIATVMLITISIASLVSALNVNYYENTCPQAESIVAAAVHKATMNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKNQAEKDGPPNISLHAFYVIDNAKKAVEAVCPGVVSCADILALAARDAVTLSGGPTWDVPKGRKDGRTSKATETRQLPAPTFNISQLQQSFSQRGLSLEDLVALSGGHTLGFAHCSSFQNRIRNFSPKQDIDPSLNPSFASSLRSICPSHNKVKNAGAPLDSSSTLFDNAYYKSLLQGKSIFSSDLALLTHPTTIALVSKFAHSQEEFERAFVKSMIKMSSITNGGQEIRLNCKCVR 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0039 315 ProSitePatterns Peroxidases proximal heme-ligand signature. 178 188 IPR019793 -
Ssu5g0039 315 CDD secretory_peroxidase 21 311 IPR033905 GO:0004601|GO:0042744
Ssu5g0039 315 PANTHER PEROXIDASE 25-RELATED 6 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 Gene3D Peroxidase, domain 2 156 297 - -
Ssu5g0039 315 PANTHER PEROXIDASE 64 6 314 - -
Ssu5g0039 315 Gene3D - 24 314 - -
Ssu5g0039 315 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 PRINTS Plant peroxidase signature 177 189 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 PRINTS Plant peroxidase signature 131 146 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 PRINTS Plant peroxidase signature 93 106 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 PRINTS Plant peroxidase signature 112 122 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 ProSiteProfiles Plant heme peroxidase family profile. 20 315 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 SUPERFAMILY Heme-dependent peroxidases 21 314 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 Pfam Peroxidase 38 282 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 PRINTS Haem peroxidase superfamily signature 178 193 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 PRINTS Haem peroxidase superfamily signature 113 130 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 PRINTS Haem peroxidase superfamily signature 131 143 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g0039 315 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0039 Ssu-Chr5 606369 608273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0039 2 315 Peroxidase AT5G42180 71.111 8.73e-173 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0039 K00430 - gmx:100820056 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0039 5 606369 608273 Ssu5g0039 5 606369 608273 ECH