Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0034 ATGCTCGATTCCGTCCTTCTCGCGCTCTTCTTGCCGTGTCTCGGCATGAGCGCCGTTTTCATCGTCTACATGTGCCTTCTCTGGTACGCCACCACCCACCACACCGACCCCGCGCTTCCGGCCAAGCCACTCTCCGAGAAAGGCCTCTCCCCTTCCCAGCTCGACAAGTTGCCCACAATCACCGGAAAGGACCTTCTCCTCGGAACCGAATGCGCCGTCTGCCTCGACGAGATCGGCGCCGACCAACCCGCTCGACTGGTTCCCGGTTGCAACCACGGCTTCCATTTGGAATGCGCTGACGCCTGGCTCTCCAAGCACCCTCTCTGCCCCGTCTGTAGAGCCAAGCTCGACCCTGTGCTTTTCTCTTCCAACGAAAATCCATGCTGA 387 0.6021 MLDSVLLALFLPCLGMSAVFIVYMCLLWYATTHHTDPALPAKPLSEKGLSPSQLDKLPTITGKDLLLGTECAVCLDEIGADQPARLVPGCNHGFHLECADAWLSKHPLCPVCRAKLDPVLFSSNENPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0034 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Ssu5g0034 128 SUPERFAMILY RING/U-box 57 119 - -
Ssu5g0034 128 SMART ring_2 71 112 IPR001841 -
Ssu5g0034 128 Pfam Ring finger domain 70 113 IPR001841 -
Ssu5g0034 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 128 - -
Ssu5g0034 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 128 - -
Ssu5g0034 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 119 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0034 Ssu-Chr5 555108 555494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0034 1 128 C3H Transcription Factor Family AT5G42200 52.206 2.83e-44 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0034 K19037 - gmx:100817919 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0034 5 555108 555494 Ssu5g0034 5 555108 555494 ECH
Ssu5g0034 5 555108 555494 Ssu1g4006 1 98934539 98934928 PCT