Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0025 ATGGGCAACGGGAGCAGTGAACGGGATCAAACCAATCAACAAAGTGATCTTGGTGCAGTTTTGCGTGATGGAAAAGAGATACTTTTTCAGGCATTCAACTGGGAGTCTCACAAATATAATTGGTGGAATAATTTAGAAGGCAAAGTTCCTGACATAGCTAAAGCTGGATTTACTTCAGTCTGGTTGCCACCACCAACTCAGTCCTTCTCACCTGAAGGTTACACTCCGCAGAACCTTTACTCTCTGAATAGTAAATATGGTTCTGAGCGTCAGTTAAAAGCTTTGCTTCAAAAGATGAAACAATACAAAGTTAGAGCAATGGCTGACATAGTTATCAATCATCGTACTGGCACCACCCAAGGACGTGGAGGGATGTATAATCGTTTTGATGGAATTCCATTAGCTTGGGATGAACGTGCTGTGACATCATGTACTGGAGGACTGGGTAATCAAAGCACAGGGGCCGTTTTCCATGGGTTTCCCAATATTGACCATACTCAAGATTTTGTGAGAAAGGATATCATAGGATGGCTCCGCTGGCTGCGCCATGACGTGGGCTTTCAGGATTTTCGTTTTGATTTTGCAAAAGGGTTTTCACCAAAATATGTGAAAGAATATATCGAAGGAGCAAAGCCATTCTTCTCTGTTGGGGAGTACTGGGATTCTTGCAATTACAAGGGTTCTACGTTGGACTATAACCAAGATAGCCATAGGCAGCGAATAATCAATTGGATTGATGGCACTGGACAACTTTCAACTGCATTTGACTTTACAACAAAGGGAATTCTCCAGGAAGCTGTCAAGGGAGATTTTTGGCATCTGCGAGATCCTCAAGGGAAGCCCCCTGGTGTGACTGGGTGGTGGCCTTCAAGATCTGTCACATTTATAGATAATCATGATACAGGCTCAACTCAGGCTCATTGGCCCTTCCCAAAAGACCATATTATGGAGGGGTATGCATACATATTGACTCATCCCGGGATACCAACAGTTTTTTACGACCACTTCTATGAGTGGGGCAACTCAATTCGTGAGCAGATTGTGAAGTTGATTGACATTCGCAAGCGTCATGGTATTCAAAGTAGATCACCTATAAGGATTCTGGAGGCCAAGCAGAACCTGTACTCTGCAATCATTGGGGAGAAAGTGTGCATGAAGATTGGAAATGGTTCATGGTGCCCATCTGGGAGGGAATGGACACTATCAACTTCTGGCCACAATTATGCTATATGGCACAAGTAA 1242 0.4372 MGNGSSERDQTNQQSDLGAVLRDGKEILFQAFNWESHKYNWWNNLEGKVPDIAKAGFTSVWLPPPTQSFSPEGYTPQNLYSLNSKYGSERQLKALLQKMKQYKVRAMADIVINHRTGTTQGRGGMYNRFDGIPLAWDERAVTSCTGGLGNQSTGAVFHGFPNIDHTQDFVRKDIIGWLRWLRHDVGFQDFRFDFAKGFSPKYVKEYIEGAKPFFSVGEYWDSCNYKGSTLDYNQDSHRQRIINWIDGTGQLSTAFDFTTKGILQEAVKGDFWHLRDPQGKPPGVTGWWPSRSVTFIDNHDTGSTQAHWPFPKDHIMEGYAYILTHPGIPTVFYDHFYEWGNSIREQIVKLIDIRKRHGIQSRSPIRILEAKQNLYSAIIGEKVCMKIGNGSWCPSGREWTLSTSGHNYAIWHK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0025 413 CDD AmyAc_arch_bac_plant_AmyA 27 365 - -
Ssu5g0025 413 PIRSF Alpha-amylase_plant 5 413 IPR013775 GO:0004556|GO:0005509|GO:0005975
Ssu5g0025 413 Pfam Alpha amylase, catalytic domain 48 116 IPR006047 GO:0005975
Ssu5g0025 413 PRINTS Alpha-amylase signature 103 114 IPR006046 GO:0004556|GO:0005975|GO:0043169
Ssu5g0025 413 PRINTS Alpha-amylase signature 187 198 IPR006046 GO:0004556|GO:0005975|GO:0043169
Ssu5g0025 413 PRINTS Alpha-amylase signature 290 302 IPR006046 GO:0004556|GO:0005975|GO:0043169
Ssu5g0025 413 Gene3D Glycosidases 26 358 - -
Ssu5g0025 413 SMART aamy 26 366 IPR006047 GO:0005975
Ssu5g0025 413 SUPERFAMILY Glycosyl hydrolase domain 361 413 - -
Ssu5g0025 413 Pfam Alpha-amylase C-terminal beta-sheet domain 356 412 IPR012850 GO:0004556|GO:0005509|GO:0005975
Ssu5g0025 413 PANTHER ALPHA-AMYLASE 2-RELATED 22 413 - -
Ssu5g0025 413 SMART alpha-amyl_c2 355 413 IPR012850 GO:0004556|GO:0005509|GO:0005975
Ssu5g0025 413 Gene3D - 359 413 IPR013780 -
Ssu5g0025 413 SUPERFAMILY (Trans)glycosidases 33 342 IPR017853 -
Ssu5g0025 413 PANTHER ALPHA-AMYLASE 22 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0025 Ssu-Chr5 424977 429823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0025 1 413 Glycoside Hydrolase AT1G76130 76.029 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0025 K01176 - gmx:100813490 826.239