Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0023 ATGACAGGAGTAGTGCCCCTGCGTCCCGCAACATACACGATAGTGTCGAGGGAGAGTGAGTGGAGGTTATTGGAAAGCGGAATGGAGGAGCAAAGGCAGAGGGAAGGCGATTTGGGTGAAAAGGAGTTAGAAGAAGTGGTGCGGGCTTTGCCTTCCGACGTCGTGAAGGAGTTGTTGTCCCATGGGATATGCACCCGCTGCATCTTTCGCCTGTTCGGCCTCCAAGGCCGCGTCTATGCTTCTCCTTCCCTCTCTTCTGAACAAGATTGCCAAACTCAACTTTGCAGACTTTGCTTAGGGATCCTGCAGTTCACGTATTCTAATGGCAGCGAAACCCTGGTTAAAAACGACAATCTCCCTCTTATCATTGCTGACATGGTTAAGCGACACGCCTATCAGTTTGATACCTTTTCCCTTGAAGTTTCCATCCCACCTATCGTTCTCGATAATGATAACACTCTTCGGTCGTATATGAAAACGAAATATGGATCTCAACCTTGGTTCCAAGAAAACTTGCAAATTGGATGCATCTCTACAAAGGACGccttaaaattttctctaatataTCCTCTTGAAAATCTTCTGGAATGTAAATCAAGTATGGGCTCTTTCCGCATTCGTTTAACATACAGTCACACAAACACATCAAAAGGGGATGAGAAATGTTCGGATAGTGCTGAGGGCtgcaagagaagaaaaataggtgAGTCCAATATAGTTGGAGAAAGATCTTTTAGCAGTTCACTTGAAAATGATTCCTCTGACTGCTGTAAATTCTTGCTAGAAAAGGCAAATGAGCCTTGCCATTTTACTTACTTTTGCTACAGGACGCCTTTCTATTTTGGTGGAAGATACCTAAAGTATTCAAGGAATGTGAGTCAAACACGCTGGATCATTGATGATGAAAGAATGGGAGAAGCATCGGTTGAGGAAATAATTGGTGGAAACATCCTCCAAGCCTGCCAAGGTGATAGTTTTAAGTTCCATGCTGCAGGCAGAGAAGATATCGATGTCCGGATGTTGGGTCCAGGCAGGCCATTTCTTGTTGAGGTGCAAAATGCACGACATATCCCATCTGAACTGTTTGTAAAAGATATAGAGAAAACGATAAATAACATGGAGAATAAATTGGTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGATGGCTGGAACCTAATGCGTGAAGGTGAAGCAGAGAAGCAGAAACAATATGCTGCTTTAGTGTGGATTTCTCGTCCTCTAAAGGATGAAGATTTTCAATGTGTTTCTTCACTCAAGGATTTGAAAGTTTTGCAGAGGACCCCAATAAGAGTGCTACATCGTCGCAGTCCTTTAGAGCGGGAAAAGATTATTCATTGGACGAAAATAGAGACAATTGCTGGAAGTtcccaatattttcttttgcacCTATGTACACAgGCTGGGACCTATATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAGCATTGGATCGATTTTGGGTTGCAGAGCTGAAATTTTGCAGCTTGATGTCACAGACATCAAAATGGAATGTTTCCTGACATAA 1560 0.4173 MTGVVPLRPATYTIVSRESEWRLLESGMEEQRQREGDLGEKELEEVVRALPSDVVKELLSHGICTRCIFRLFGLQGRVYASPSLSSEQDCQTQLCRLCLGILQFTYSNGSETLVKNDNLPLIIADMVKRHAYQFDTFSLEVSIPPIVLDNDNTLRSYMKTKYGSQPWFQENLQIGCISTKDALKFSLIYPLENLLECKSSMGSFRIRLTYSHTNTSKGDEKCSDSAEGCKRRKIGESNIVGERSFSSSLENDSSDCCKFLLEKANEPCHFTYFCYRTPFYFGGRYLKYSRNVSQTRWIIDDERMGEASVEEIIGGNILQACQGDSFKFHAAGREDIDVRMLGPGRPFLVEVQNARHIPSELFVKDIEKTINNMENKLVRVKNLKLVGSDGWNLMREGEAEKQKQYAALVWISRPLKDEDFQCVSSLKDLKVLQRTPIRVLHRRSPLEREKIIHWTKIETIAGSSQYFLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILGCRAEILQLDVTDIKMECFLT 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0023 519 PANTHER UNCHARACTERIZED 40 514 IPR039894 -
Ssu5g0023 519 Gene3D - 403 513 - -
Ssu5g0023 519 Gene3D - 279 402 - -
Ssu5g0023 519 PANTHER BNAC07G15400D PROTEIN 40 514 - -
Ssu5g0023 519 Coils Coil 363 383 - -
Ssu5g0023 519 SUPERFAMILY Pseudouridine synthase 399 513 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0023 K07583 - gmx:100780683 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0023 5 323879 329425 Ssu5g0023 5 323879 329425 ECH