Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0022 ATGACGCTCAACATAGCAGCTGTGctgtgtttttttctctttgccATCGCTGTCGCTGAAGATCCATACAGGTTCTTCAACTGGAATGTTACATACGGCGACATTTATCCACTTGGTGTTCGCCAGCAGGGAATACTTATCAACGGTCAATTCCCAGGTCCAGACATTCATTCTGTTACCAACGACAACCTCATCATCAATGTCTTCAATAGCTTGGACCAGCCCTTTCTCCTCTCCTGGAACGGGGTCCAGCAGAGAAGGAACTCGTTTGAAGATGGGGTTTTCGGAACTACATGTCCCATCCCACCAGGAGGGAACTTCACTTACATACTTCAAGTGAAGGATCAAATTGGAAGCTTCTACTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGCATTAGGATTTTGAGCAGGCCTAGAATTCCAGTCCCTTTCGATGATCCCGCCGGGGATTACACTGTCCTCATTGGAGATTGGTACAAGTCCAACCACACGGATTTGAGGGCTCAGCTTGATAACGGTAGGAAGCTGCCTTTCCCTGATGGAATCCTCATCAACGGTCGTGGCCCTAACGGAGCATCTTTCAATGTGGAACAAGGAAAGACTTACAGGCTTAGAATATCAAATGTGGGGTTGGAAAATTCCCTAAACTTCCGCATACAAAACCACAAATTAAAGCTGGTAGAAGTGGAAGGAACACACACCCTTCAAACTACCTACTCATCCCTTGACGTCCACGTGGGCCAATCTTACTCTGTTCTAGTAACTGCCGATCAACCTGCTCAGGACTATTACATTGCGGTCTCCACTCGATTTACCTCCACAGTTCTAACGACCACTGGAATTCTTCGCTATAGCAACTCTGCAGGCCCAGTATCAGGCCCACCCCCTGGTGGACCTACCATCCAAATTGATTGGTCTTTGAACCAGGCCCGCTCCATCAgGACCAACCTGACAGCAAGTGGACCAAGGCCGAACCCGCAAGGCTCCTACCATTACGGTCTCATAAACACAACGAGGACCATCATACTGTCGAGTTCAGCTGGTCTAGTGAATGGCAAACAAAGATACGCAATTAACAGCGTGTCTTACATTGCTCCTGACACTCCTCTTAAGCTCGCCGACTACTTCAAAATCTCTGGCGTTTTCCGTGTGGGAAGCATTTCTGACAGGCCCACTGGCGGTGGCATATACCTTGACACATCTGTTATGCAAACTGACTACAGAACATTTGTGGAGATTGTCTTCCAAAACGACGAAGACATCATTCAGAGCTATCATCTCGATGGCTACTCTTTCTTTGTGGTTGGCATGGATGGAGGACAGTGGACAACTGCTAGTAGGAACCAGTACAATCTTCGAGATGCAGTTTCGCGGTGTACCACTCAGGTATATCCCAAGTCATGGACTGCTATATATGTTGCGCTTGACAATGTGGGAATGTGGAACTTGAGGTCTGAATTTTGGGCACGCCAATACCTTGGCCAACAGTTTTATATGCGCGTTTATACAACATCGACCTCAATCAGAGATGAATATCCTGTTCCAAAGAATGCACTGCTTTGTGGTAAGGCAAGTGGGAGACACACTCGACCCCTTTGA 1617 0.4694 MTLNIAAVLCFFLFAIAVAEDPYRFFNWNVTYGDIYPLGVRQQGILINGQFPGPDIHSVTNDNLIINVFNSLDQPFLLSWNGVQQRRNSFEDGVFGTTCPIPPGGNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFDDPAGDYTVLIGDWYKSNHTDLRAQLDNGRKLPFPDGILINGRGPNGASFNVEQGKTYRLRISNVGLENSLNFRIQNHKLKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPAQDYYIAVSTRFTSTVLTTTGILRYSNSAGPVSGPPPGGPTIQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLINTTRTIILSSSAGLVNGKQRYAINSVSYIAPDTPLKLADYFKISGVFRVGSISDRPTGGGIYLDTSVMQTDYRTFVEIVFQNDEDIIQSYHLDGYSFFVVGMDGGQWTTASRNQYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGKASGRHTRPL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0022 538 PANTHER MULTI-COPPER OXIDASE 13 531 IPR045087 -
Ssu5g0022 538 SUPERFAMILY Cupredoxins 340 529 IPR008972 -
Ssu5g0022 538 Pfam Multicopper oxidase 30 143 IPR011707 GO:0005507
Ssu5g0022 538 SUPERFAMILY Cupredoxins 150 330 IPR008972 -
Ssu5g0022 538 CDD CuRO_3_AAO_like_1 372 492 IPR034275 GO:0005507
Ssu5g0022 538 Pfam Multicopper oxidase 374 510 IPR011706 GO:0005507|GO:0016491
Ssu5g0022 538 CDD CuRO_2_AAO_like_1 155 290 IPR034271 -
Ssu5g0022 538 Gene3D - 339 535 IPR008972 -
Ssu5g0022 538 Gene3D - 154 328 IPR008972 -
Ssu5g0022 538 SUPERFAMILY Cupredoxins 18 170 IPR008972 -
Ssu5g0022 538 PANTHER MULTI-COPPER OXIDASE-LIKE PROTEIN 13 531 - -
Ssu5g0022 538 Gene3D - 23 144 IPR008972 -
Ssu5g0022 538 CDD CuRO_1_AAO_like_1 25 140 IPR034273 GO:0005507
Ssu5g0022 538 Pfam Multicopper oxidase 156 292 IPR001117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0022 Ssu-Chr5 314037 322320 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0022 - - gmx:100812416 1021.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0022 5 314037 322320 Ssu5g0022 5 314037 322320 ECH
Ssu5g0022 5 314037 322320 Ssu1g4026 1 99280719 99289813 PCT