Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0020 ATGGCGGGTCAGTGCTCCAATGAAGGCTCCAGTGCTGGAAATATTTCAGCAGAATGTTCAGATTCAACTGTTAAGCTCAATATCAAGACTCTAGATTCCCGCATCTACAGTTTTCAAGTGGACAAAAATATGCCTGTTTCGTTGTTCAAAGAGAAAATTGCAAATGAAATTGGTGTTCCAGTTAGTCAGCAACGGCTGATATTTAGAGGAAAAGTCTTAAAGGACGAGCATGGTCTTTCTGAGTATCATGTTGAGAATGGGGATACATTGCATTTAGTTGAAAGACAACCAAATCAGTCGCAGGCTTCTGGTACGAGTTCTGGCGAGTCAACTGGTACAAGTGGTAACCGAGGAAATGATGTTGGCTCAGGGGCTCCTCGTAACCGTGTTGGGCAAATTTCACACAGTGTTGTTCTTGGAACATTTAATGTAGGGGAACAAGGTGAAGGAATTGTTCATGACCTCACTCGGGTTATCGGACATGTTTTGAGTTCTATTGGAAACGGTGGCCAGAGCACAATTAGTGGTCCTAATGCTATACAAACTTCTTCAGCTCACCCAGGGAATGAAACTGAAGGGATGCATGCTAGAAATCAAAACTCAGCAGGAAATCAGGCACCATCTGGACAGACATTTCCTGGCCCAGCATTCCAATCTGTGTCTCATGTTGTTCAGATTCCAGTGGCAGCTGGAGCCATACCCCTTCCTTCTCTCAATGCACCAATTCCTGATTCATTGAATACACTGTCTGAGTTTATGAATCGCATGGAACATACACTAACACAAAATGGTTATCAGTCAAATCTTTCATCAGCTAACCCTGGAGATCAGCAAGTGGAATTGCCTTCTAATGCACAAGGGTTGCCGACACTTGAAGCATTAAGCATTGTCTTGCATCGTGCAGAACAGTTACTTGGTGGTCAAGCTGTTGCTGCACTATCTCATATTGCAGGGCGCTTGGAAAGAGAAGGAATTTCTGCTGATCTACGCATAAGGGGTCAAATACAGTCAGAATCAATGCAAATAGGACTTGCTATGCAGCATTTGGGGGCACTTCTACTTGAACTTGGCCGAACAATGTTGACACTGCGTATGGGACAGTCTTCTGCAGAATCTGTTGTTAACGCTGGACCAGCAGTTTACATTTCTCCATCAGGACCAAATCCTATAATGGTGCAGCCTTTTCCACTTCAGACAAGCTCCCTCTTTGGTGGTCCAGTTCCCTCCTCAACTCCTGCAACTTTAGGCACCATTGGTATTGGAAATGCTCCTAGGAACGTAAACATTCATATACATGCTGGTACCTCTCTTGCACCAATTGTTTCAGCAATTGGTTCTAGGCCAAATAATGGAGAAGGGACAAGAAGTGAACACCGTAATGAGCCTGGCTCTGGTGATTCAGGGTCAACACGGGTATTACCTGTTAGAAATGTCATAGCAGCAACTATCCCATCACACCCTCCTGCTGTTGGAGTCTCTAGTAGCACACAAACTGGGTTTGGTGTTTCTACTTCACAGCCACCTTCTGATTCAGCTTCATTGTCAGTCTATTTTAGCTGA 1560 0.4442 MAGQCSNEGSSAGNISAECSDSTVKLNIKTLDSRIYSFQVDKNMPVSLFKEKIANEIGVPVSQQRLIFRGKVLKDEHGLSEYHVENGDTLHLVERQPNQSQASGTSSGESTGTSGNRGNDVGSGAPRNRVGQISHSVVLGTFNVGEQGEGIVHDLTRVIGHVLSSIGNGGQSTISGPNAIQTSSAHPGNETEGMHARNQNSAGNQAPSGQTFPGPAFQSVSHVVQIPVAAGAIPLPSLNAPIPDSLNTLSEFMNRMEHTLTQNGYQSNLSSANPGDQQVELPSNAQGLPTLEALSIVLHRAEQLLGGQAVAALSHIAGRLEREGISADLRIRGQIQSESMQIGLAMQHLGALLLELGRTMLTLRMGQSSAESVVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGPVPSSTPATLGTIGIGNAPRNVNIHIHAGTSLAPIVSAIGSRPNNGEGTRSEHRNEPGSGDSGSTRVLPVRNVIAATIPSHPPAVGVSSSTQTGFGVSTSQPPSDSASLSVYFS 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0020 519 PRINTS Ubiquitin signature 34 54 IPR019956 -
Ssu5g0020 519 PRINTS Ubiquitin signature 55 75 IPR019956 -
Ssu5g0020 519 PRINTS Ubiquitin signature 76 97 IPR019956 -
Ssu5g0020 519 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Ssu5g0020 519 MobiDBLite consensus disorder prediction 442 471 - -
Ssu5g0020 519 CDD Ubl_ubiquitin_like 26 93 - -
Ssu5g0020 519 MobiDBLite consensus disorder prediction 167 215 - -
Ssu5g0020 519 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Ssu5g0020 519 MobiDBLite consensus disorder prediction 485 519 - -
Ssu5g0020 519 SUPERFAMILY Ubiquitin-like 19 98 IPR029071 -
Ssu5g0020 519 MobiDBLite consensus disorder prediction 488 519 - -
Ssu5g0020 519 MobiDBLite consensus disorder prediction 96 128 - -
Ssu5g0020 519 PANTHER OS07G0498800 PROTEIN 6 514 - -
Ssu5g0020 519 MobiDBLite consensus disorder prediction 96 121 - -
Ssu5g0020 519 Gene3D - 13 108 - -
Ssu5g0020 519 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 6 514 - -
Ssu5g0020 519 SMART ubq_7 24 95 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0020 Ssu-Chr5 258641 266833 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0020 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 1.51e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0020 - - gmx:100783611 897.886