Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0017 ATGATGAAGAAGGAACCCAGGGAGAGGCGCGTGAGGGAGCGCGTGGAGCAGGACGACACGGCCACGCTGCTCTACTCCTCCGGCACCACGGGACCCAGCAAGGGCGTCGTTTCCTCCCACCGGAACCTCATAGCCATGGTACAAATCGTGCTTGGTCGGTTCAAGATGGAAGAGAACGAAACGTTCATCTGCACGGTGCCCATGTTTCATATATACGGTCTGGCGGTCTTCGCCACGGGGCTGCTGGCCTCAGGGTCCACCATTGTGGTGCTGTCCAAATTCGAGATGCACGACGTGCTGTCGGCGATTGAGAGGTTCCGGGCGACGTACCTGCCGCTCGTGCCGCCCATTCTCGTTGCGATGCTCAACAACGCGGATCGCATTAAGGGCAAGTACGACCTCAGATCGCTGCATTCGGTGCTGTCGGGTGGGGCTCCGTTGAGTAAGGAGGTGATAGAGGGGTTTGTCGACAAGTACCCCAACGTAACCATCCTTCAGGGTTACGGCTTGACGGAATCCACCGGCATTGGGGCGTCCACCGACTCCTTGGAGGAGAGTCGCAGGTACGGCACGGCAGGGCTCTTGTCGCCCGCCACCGAGGCTCTGATCGTCGACCCTGATTCCGGCCAATCGCTTCCGGTTAACCGCACCGGTGAGCTCTGGCTCAGGGGTCCTACCATTATGAAAGGTTATTTCAGTAACGAAGAAGCAACCACATCAACCCTTGATTCAAAAGGATGGTTAAGAACAGGGGATGTTTGTTACATTGACAATGATGGATTCATATTTATTGTCGATCGGTTAAAAGAGCTCATCAAATACAAGGGATATCAGGTCCCTCCAGCAGAACTAGAGGCCCTGTTGCTGACTCATCCTGCTATTTTAGATGCTGCTGTCATCCCGTATCCAGATAAGGAGGCTGGGCAGTATCCAATGGCATACGTGGTGAGGAAGGCTGGAAGTAGCTTATCAGAAAGCCAAGTTATGGATTTTGTTGCAGAGCAGGTGGCTCCGTACAAGCGGATTCGAAAAGTGGCGTTTATATCCTCCATACCCAAAAATCCATCTGGCAAAATTCTTCGGAAGGATCTCATCAAGCTCGCAACGTCTAAACTCTGA 1119 0.5371 MMKKEPRERRVRERVEQDDTATLLYSSGTTGPSKGVVSSHRNLIAMVQIVLGRFKMEENETFICTVPMFHIYGLAVFATGLLASGSTIVVLSKFEMHDVLSAIERFRATYLPLVPPILVAMLNNADRIKGKYDLRSLHSVLSGGAPLSKEVIEGFVDKYPNVTILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPATEALIVDPDSGQSLPVNRTGELWLRGPTIMKGYFSNEEATTSTLDSKGWLRTGDVCYIDNDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPAILDAAVIPYPDKEAGQYPMAYVVRKAGSSLSESQVMDFVAEQVAPYKRIRKVAFISSIPKNPSGKILRKDLIKLATSKL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0017 372 CDD 4CL 17 364 - -
Ssu5g0017 372 ProSitePatterns Putative AMP-binding domain signature. 23 34 IPR020845 -
Ssu5g0017 372 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 1 371 - -
Ssu5g0017 372 Pfam AMP-binding enzyme 10 274 IPR000873 -
Ssu5g0017 372 Pfam AMP-binding enzyme C-terminal domain 283 358 IPR025110 -
Ssu5g0017 372 SUPERFAMILY Acetyl-CoA synthetase-like 10 369 - -
Ssu5g0017 372 Gene3D - 270 371 IPR045851 -
Ssu5g0017 372 PANTHER BNAA06G14440D PROTEIN 1 371 - -
Ssu5g0017 372 Gene3D - 2 269 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0017 Ssu-Chr5 232671 235233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0017 1 372 Monolignol Biosynthesis Gene Families AT1G20500 69.067 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0017 K10526 - gmx:100811344 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0017 5 232671 235233 Ssu5g0017 5 232671 235233 ECH