Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0011 aTGCAGAATCGCCCATCAAGCGCCTTCAATTCTCCCTTCTGGACTACTAATTCTGGTGCTCCCGTCTGGAACAATAACTCATCGCTGACGGTTGGATCTAGAgGTCCAATTCTTCTGGAGGATTATCATCTGGTGGAGAAGCTTGCAAACTTTGACAGGGAACGGATCCCTGAACGTGTTGTCCATGCGAGGGGAGCTAGCGCAAAGGGTTTCTTTGAAGTGACGCATGACATTTCTCACCTCACCTGTGCTGATTTCCTTCGAGCTCCTGGAGTTCAGACACCTGTCATCGTCCGTTTCTCCACTGTTATCCATGAGCGTGGCAGCCCTGAAACCATGAGGGATCCTCGTGGATTTTCTGTTAAATTTTACACAAGAGAGGGTAACTTCGACCTTGTGGGAAACAACTTCCCTGTCTTCTTCGTCCGTGATGGCCACAAGTTTCCTGATATGGTTCATGCTCTCAAACCCAATCCCAAGACCCACATCCAGGAGGATTGGAGGATCCTTGATTTCTTCTCCCACCATCCCGAAAGTCTTCATATGTTCACCTTCTTATTTGATGACGTAGGTGTCCCTCAAGATTACAGGCATATGGATGGTTTTGGTGTTAACACATACACCCTTATCGACAAGGCTGGGAAAGCACTCTATGTCAAATTTCATTGGAGAACCACCTGTGGTGTAAAGTGTCTATTGGAAGAGGAGGCCATTAGGGTTGGAGGATCCAACCACAGTCATGCCACCAAAGACCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAACTTTACATCCAAACGTTGGATCCTGACCACGAAGACAGATTCGACTTTGACCCACTTGATGTAACTAAGATCTGGCCTGAGGATATTTTGCCCCTGCAGCCAGTTGGCCGCATGGTCTTGAATAAGAACATAGATAACTTCTTTGCCGAGAATGAACAACTTGCATTTTGCCCTGCCATTGTGGTACCTGGTGTATACTACTCGGATGATAAAATGCTTCAGACTCGGATATTCTCCTATGCTGATAGTCAGAGACACAGACTTGGACCAAATTATCTGCAGATTCCTGCTAATGCCCCCAAGTGTGCCCATCACAACAATCACCATGATGGTTTCATGAATTTCATGCACAGGGATGAAGAGGtaaattaa 1167 0.4619 MQNRPSSAFNSPFWTTNSGAPVWNNNSSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETMRDPRGFSVKFYTREGNFDLVGNNFPVFFVRDGHKFPDMVHALKPNPKTHIQEDWRILDFFSHHPESLHMFTFLFDDVGVPQDYRHMDGFGVNTYTLIDKAGKALYVKFHWRTTCGVKCLLEEEAIRVGGSNHSHATKDLYDSIAAGNYPEWKLYIQTLDPDHEDRFDFDPLDVTKIWPEDILPLQPVGRMVLNKNIDNFFAENEQLAFCPAIVVPGVYYSDDKMLQTRIFSYADSQRHRLGPNYLQIPANAPKCAHHNNHHDGFMNFMHRDEEVN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0011 388 PANTHER CATALASE 3 388 - -
Ssu5g0011 388 ProSitePatterns Catalase proximal heme-ligand signature. 341 349 IPR002226 GO:0020037
Ssu5g0011 388 PANTHER CATALASE 3 388 IPR018028 GO:0004096|GO:0006979|GO:0020037
Ssu5g0011 388 CDD catalase_clade_1 13 388 - -
Ssu5g0011 388 ProSiteProfiles catalase family profile. 11 388 IPR018028 GO:0004096|GO:0006979|GO:0020037
Ssu5g0011 388 SUPERFAMILY Heme-dependent catalase-like 10 388 IPR020835 GO:0020037
Ssu5g0011 388 SMART Catalase_2 15 388 IPR011614 GO:0004096|GO:0020037
Ssu5g0011 388 ProSitePatterns Catalase proximal active site signature. 51 67 IPR024708 GO:0004096
Ssu5g0011 388 Pfam Catalase 15 385 IPR011614 GO:0004096|GO:0020037
Ssu5g0011 388 PRINTS Catalase signature 296 323 IPR018028 GO:0004096|GO:0006979|GO:0020037
Ssu5g0011 388 PRINTS Catalase signature 112 129 IPR018028 GO:0004096|GO:0006979|GO:0020037
Ssu5g0011 388 PRINTS Catalase signature 91 109 IPR018028 GO:0004096|GO:0006979|GO:0020037
Ssu5g0011 388 PRINTS Catalase signature 28 51 IPR018028 GO:0004096|GO:0006979|GO:0020037
Ssu5g0011 388 PRINTS Catalase signature 131 149 IPR018028 GO:0004096|GO:0006979|GO:0020037
Ssu5g0011 388 PRINTS Catalase signature 328 354 IPR018028 GO:0004096|GO:0006979|GO:0020037
Ssu5g0011 388 Gene3D Catalase core domain 5 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0011 Ssu-Chr5 169597 170995 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0011 K03781 - gmx:100037447 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0011 5 169597 170995 Ssu5g0011 5 169597 170995 ECH