Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0010 ATGGCTAGAGGATGGGGCGTTGATAATTTAGGGTCAAACTCAAACTCAAACTCGAAGAAAGCCCCAGCCACGAGTTTCAGTTTTCGCGAGCTTGCATCGGCAGCGAGGGGTTTTAAGGAAGTCAACTTGATTGGGGAAGGAGGTTTTGGAAAGGTTTACAAGGGTCGTCTCTCCACGGGCCAGGTTGTTGCTATAAAACAATTACGTCTAGATGGTGAAGGTCATCAAGGTAATCGGGAATTTGTCACCGAGGTCCTTATGTTAAGCCTCCTTCATCATTCTAAtcttgttaaattaattggCTACTGCACCCATGGAGATCAAAGGCTTTTGGTTTATGAATACATGCCTATGGGAAGCCTCGAACAGCATATTTTCGATCCTAATCCAAAGGAAAAACCACTAAGTTGGAGAACTCGGCTGAAGATTGCTGTGGGGGCTGCCCGGGGCCTCCAGTATCTCCATTGTAAAGCCAATCCACCTGTTATCTATCGGGACTTGAAATCTGCCAACATCTTATTAGACGATAATTTAAGCCCAAAACTCTCAGATTTTGGGCTTGCTAAGCTAGGACCTGTTGGAGACAATACCCATGTTTCCACCAGAGTGATGGGAACATATGGCTACTGTGCCCCCGAGTACGCCATGAGTGGCAAATTAACTCTTAAATCTGATATCTACAGCTTTGGTGTCGTCTTGCTAGAGTTGATCACTGGACGGAAGGCGATGGATTTCACTAGAAGACCACGGGAGCAAAGCTTGGTTGCATGGTCTCGCCCATTTTTGAGTGACCGGAGAAAGCTATCGCAAATGGTTGACCCTCTTTTGGAAGGAAACTACCCCTTACGTTGTTTGCACCATGCAATTGCTGTTACTGCAATGTGCCTCCAGGAGCAACCGAATCTTCGTCCACCTATTGGTGATATTGTCGTTGCACTGGAGTACTTGGCCTCTGAAAGTGTTTCTGAAGTCCTCAGGCATGGGGTGCGCAGCCCACTACGCCAACCACAATCAGAAACAGATAGAAACcagaattaa 1038 0.4586 MARGWGVDNLGSNSNSNSKKAPATSFSFRELASAARGFKEVNLIGEGGFGKVYKGRLSTGQVVAIKQLRLDGEGHQGNREFVTEVLMLSLLHHSNLVKLIGYCTHGDQRLLVYEYMPMGSLEQHIFDPNPKEKPLSWRTRLKIAVGAARGLQYLHCKANPPVIYRDLKSANILLDDNLSPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKAMDFTRRPREQSLVAWSRPFLSDRRKLSQMVDPLLEGNYPLRCLHHAIAVTAMCLQEQPNLRPPIGDIVVALEYLASESVSEVLRHGVRSPLRQPQSETDRNQN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0010 345 PANTHER OS07G0668900 PROTEIN 15 328 - -
Ssu5g0010 345 PANTHER OS07G0668900 PROTEIN 15 328 - -
Ssu5g0010 345 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Ssu5g0010 345 CDD STKc_IRAK 44 314 - -
Ssu5g0010 345 SMART serkin_6 38 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0010 345 ProSitePatterns Protein kinases ATP-binding region signature. 44 66 IPR017441 GO:0005524
Ssu5g0010 345 SUPERFAMILY Protein kinase-like (PK-like) 13 314 IPR011009 -
Ssu5g0010 345 Gene3D Phosphorylase Kinase; domain 1 8 115 - -
Ssu5g0010 345 Pfam Protein kinase domain 38 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0010 345 MobiDBLite consensus disorder prediction 1 21 - -
Ssu5g0010 345 PIRSF ILK 3 327 - -
Ssu5g0010 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Ssu5g0010 345 ProSiteProfiles Protein kinase domain profile. 38 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0010 Ssu-Chr5 158681 162953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0010 23 318 Glycoside Hydrolase AT3G07070 63.300 9.35e-138 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Ssu5g0010 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0010 - - gmx:100794722 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0010 5 158681 162953 Ssu5g0010 5 158681 162953 ECH