Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0009 ATGGTGAAGAGGAGGATGGCCGACACGAACACGAACACCAAAGAAGAAAGCCAAAAAATGGATGCGATACCCCTGCTCACCCCATACAAGATGGGAAATTTTAATCTATCCCACAGGATGGCGTTGGCACCGTTAACACGATCAAGGTCTTACAGCTTCGTCCCTCAGCCGCATGCTGCTCTATATTATTCTCAAAGAACAACCAAGGGTGGCTTCTTGATTGGGGAAGCCTCTGGGGTGTCTGACACGGCACAGGGGTACCCTAATACACCTGGCATTTGGACAAGAGAACAGGTGGAAGCTTGGAAACCAATTGTGAGTGCTGTTCATGAAAAGGGgggtattttcttttgtcaacTTTGGCACGCGGGAAGAGTCTCCAACTATGGATACCAGCCAGATGGGGAAGCCCCAATTTCTAGCACAAACAAGCCACTTCGTAACGACATCTTCAACAAAGAAGCATCAGCTGATAAATACCCACCTCCTCGCCGGGTGAGAGCGGATGAAATCCCCAAGCTTGTTAATGACTTCGTAATTGCGGCCAAAAATGCCATGGAAGCGGGTTTTGATGGAGTAGAGATACACGGAGGGAACGGGTACTTGCTGGATCAGTTCCTAAAGGACAAAGTGAACGACAGAGACGACGAGTACGGAGGTAACTTAGAAAATCGTTGCCGCTTCCCACTGCAAGTGGTGAAGGCAGTAGCTGATGAGATCGGAGCTGACAAGGTTGGGGTTAGGCTCTCCCCTTTCGCTGATTATAATGATTGTGAAGACTCTGACCCTCAAGCATTGGGTATTCACATGGCTCAATCATTGAGTCAATTGGGCATTCTCTATTGTCATATGATCGAGCCCAGGATGGTAACACAATTCCAGAAGTTTGACACCAAATGGTCCCTAACGCCAATTAGGAAGGTCTTCAACGGGACTTTTATTGTCGCTGGTGGTTACAATAGGAGTGAGGGAAATCAAGCTATATCCTGTGCTGCTGCCGATTTGGTCGCTTATGGACGCCTTTTTTTGGCTAATCCAGATCTCCCCACAAGATTTCAGCTCGATGCTCAGTTAAACGACCCCGATGCCACCACCTTTTATACGCATCACCCTGTGCTTGGATATACAGGATTATCCATTTCTTCAAGATAG 1152 0.4705 MVKRRMADTNTNTKEESQKMDAIPLLTPYKMGNFNLSHRMALAPLTRSRSYSFVPQPHAALYYSQRTTKGGFLIGEASGVSDTAQGYPNTPGIWTREQVEAWKPIVSAVHEKGGIFFCQLWHAGRVSNYGYQPDGEAPISSTNKPLRNDIFNKEASADKYPPPRRVRADEIPKLVNDFVIAAKNAMEAGFDGVEIHGGNGYLLDQFLKDKVNDRDDEYGGNLENRCRFPLQVVKAVADEIGADKVGVRLSPFADYNDCEDSDPQALGIHMAQSLSQLGILYCHMIEPRMVTQFQKFDTKWSLTPIRKVFNGTFIVAGGYNRSEGNQAISCAAADLVAYGRLFLANPDLPTRFQLDAQLNDPDATTFYTHHPVLGYTGLSISSR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0009 383 PANTHER NADH OXIDOREDUCTASE-RELATED 21 378 IPR045247 GO:0010181|GO:0016491
Ssu5g0009 383 Gene3D Aldolase class I 11 382 IPR013785 -
Ssu5g0009 383 CDD OYE_like_FMN 24 362 - -
Ssu5g0009 383 Pfam NADH:flavin oxidoreductase / NADH oxidase family 25 355 IPR001155 GO:0010181|GO:0016491
Ssu5g0009 383 PANTHER 12-OXOPHYTODIENOATE REDUCTASE-LIKE PROTEIN 21 378 - -
Ssu5g0009 383 SUPERFAMILY FMN-linked oxidoreductases 21 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0009 Ssu-Chr5 138331 144897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0009 17 376 Acyl Lipid Metabolism Gene Families AT1G76690 65.000 0.0 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0009 K05894 - gmx:100810271 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0009 5 138331 144897 Ssu5g0009 5 138331 144897 ECH