Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0004 atggaGAAGACAGGAGTATTATCGGCGAAAGAGGCATTCGAGAAGCTTGAAAAGGTGGGAGAAGGGACATACGGGAAGGTTTACAGGGCAAGAGAGAAGGCTACTGGGAAGATCGTTGCCCTCAAGAAGACTCGCCTCCACGAGGACGAAGAAGGTGTCCCTCCCACCACTCTCCGTGAGATTTCCATTCTGCGAATGCTCTCTCGCGATCCCCATGTCGTCAGGTTAATGGATGTCAAACAAGGTCAGAACAAGGAAGGGAAGACAGTGCTCTACTTGGTATTTGAGTACATGGATACCGATCTCAAGAAATTCATTCGCTCTTTCCGTCAAACTGGAGAAACCATTCCACCCCAAACCatcaaaAGCTTGATGTACCAACTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGAATCTTGCACAGGGACTTGAAGCCTCACAATCTCTTGATGGACCGAAAAACAATGATGCTTAAAATAGCTGATCTTGGACTGGCTCGAGCATTTACTGTGCCAATTAAGAAATATACACACGAGATACTAACCCTGTGGTATAGAGCTCCTGAAGTCCTCTTGGGAGCTACCCATTACTCAATGGCGGTGGACATGTGGTCCGTTGGCTGCATATTTGCCGAACTTGTCACCAAACAAGCACTCTTTCCTGGTGATTCCGAACTGCAACAACTTCTTCATATATTCAGGCTATTGGGTACTCCTAATGAAGAGGTGTGGCCAGGCGTGAGTAAACTAATGAACTGGCATGAATACCCCCAGTGGAACCCTCAAAGTCTGTCAACGGCTGTTCCAAGTTTGGATGAGCTTGGACTGGATCTGCTATCTcAAATGTTGAAATATGAACCTTCCAAGAGGATTTCCGCAAAGAAAGCAATGGAACATCCTTACTTTGATGACCTGGACAAGAGGCACCTTTAG 936 0.4647 MEKTGVLSAKEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREISILRMLSRDPHVVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIRSFRQTGETIPPQTIKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSMAVDMWSVGCIFAELVTKQALFPGDSELQQLLHIFRLLGTPNEEVWPGVSKLMNWHEYPQWNPQSLSTAVPSLDELGLDLLSQMLKYEPSKRISAKKAMEHPYFDDLDKRHL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0004 311 ProSiteProfiles Protein kinase domain profile. 13 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0004 311 Pfam Protein kinase domain 13 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0004 311 Gene3D Phosphorylase Kinase; domain 1 8 99 - -
Ssu5g0004 311 SMART serkin_6 13 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0004 311 Gene3D Transferase(Phosphotransferase) domain 1 101 310 - -
Ssu5g0004 311 PANTHER - 7 309 - -
Ssu5g0004 311 SUPERFAMILY Protein kinase-like (PK-like) 11 306 IPR011009 -
Ssu5g0004 311 PANTHER CELL DIVISION PROTEIN KINASE 7 309 - -
Ssu5g0004 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Ssu5g0004 311 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0004 Ssu-Chr5 53107 54634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0004 1 311 Core Cell Cycle Gene Families AT1G20930 86.667 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Ssu5g0004 Pkinase 1.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0004 K07760 - gmx:100808302 622.083