Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0003 ATGGTTTCGCTTCATCCACTAGCGTGTCCTTTGTCACTTTCTTCTTCATCCTCCAGTTTTCTCAGATGCCCCCTTTGGTCTCGCCGCTTCTTCTCTGTAAGTTCTGCCCCGAAACGAAGAAGCAGCTTCATAACAGAGCAGCCTTCTTTCTTCTGTAATGCTTCGTGGCAAGAGCTCGCGGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCCGTGAAAGCTATTGCTAATAGTCCACTAGGGGAGTCGCTTCAGAGGAAAATGGAGGAGAGAAAGAAATTTGCTGTAGAAAACTCGTCTAAATTCAAGGCCTTAGCGGAGGAGGCCCGAAAGGAGAGCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAATACCCATCATATCTTACTGGGGAACTGCCTGGGGATTATGGCTTTGACATTGCTGGGCTTGGCAAGGATCCTGTGGCACTGCAAAAGTACTTCAACTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCTGTCGGTGCTCTGATTCCTGAAATATTAGACCTATTGGGAGCCTTTCACTTTGTAGAACCTGTGTGGTGGCGTGTTGGTTATTCAAAGCTCAAGGGAGATACTCTAGATTACCTTGGCATCCAAGGTCTGCACTTTGCTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGGTTGGACCGGAATACGCTAGATATTGTGGGACTGACGCATTGGAGCCTCTAGGAATATATCTGCCTGGTGATATAAATTATCCTGGAGGAGCATTGTTTGATCCCTTGAATCTGTCCAACGATCCTGAAGCTTTTGAAGAGCTGaaggtaaaagaaataaaaaatggacgCTTGGCAATGGTTGCCTGGTTGGGTTTTTACGTGCAAGCAGCACTGACTGGTAAAGGTCCTGTACAGAACCTTATTGATCACATCTCCGATCCTTTCCACAACAACATGCTGGATTCCCTCGACTTCATGAAAGTAGTCATGTAA 1029 0.4558 MVSLHPLACPLSLSSSSSSFLRCPLWSRRFFSVSSAPKRRSSFITEQPSFFCNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEERKKFAVENSSKFKALAEEARKESFWYGEDRPRWLGPISYEYPSYLTGELPGDYGFDIAGLGKDPVALQKYFNFEILHARWAMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYCGTDALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLIDHISDPFHNNMLDSLDFMKVVM 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0003 342 Pfam Chlorophyll A-B binding protein 133 308 IPR022796 -
Ssu5g0003 342 Gene3D Chlorophyll a/b binding protein domain 123 334 - -
Ssu5g0003 342 SUPERFAMILY Chlorophyll a-b binding protein 115 334 - -
Ssu5g0003 342 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 7, CHLOROPLASTIC 53 331 - -
Ssu5g0003 342 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 53 331 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0003 Ssu-Chr5 22458 29495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0003 38 336 Chloroplast and Mitochondria Gene Families AT1G76570 76.589 2.65e-176 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0003 K14172 - gmx:100786260 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0003 5 22458 29495 Ssu5g0003 5 22458 29495 ECH