Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3585 ATGTACCACAACCTTAACCTTGCAAGGTTGTGGATTGCTTTGCTTGCGGTCTCAACCACCGCAGTTCATTGCAAAACTGCCTCCCAAGATGTTTCAGCCCTTAATGTGATGTATACCAGCTTAAATTCCCCTTCAAAACTGAGTGGCTGGAAATCAAGTGGAGGTGATCCTTGTGGCGACTCCTGGGAAGGAATCAAATGCTCAGGCTCTTCTATCACAGAAATTGATTTGAGCAACAACAACCTCAAGGGTGATATACCATATCAACTTCCTCCAAATGCTCGTTATATAGATCTTTCTAAGAACGACTTCACTGGAAGTATACCTTATTCCTTTTCTCAGATGGGTGACCTCAACGACCTCAGAAATCTTGCACATAATCAGCTCAAAAACCAGTTGGGTGATATGTTTGGGAAGCTCAGTAAACTCAAACAACTGCACCtacaaaacaatcaattcacTGGTTCAGTAAATGTCCTTGCCGAACTTCCACTTGAAGATTTgAATGTTGAAAACAACAAATTTTCCGGTTGGGTCCCTGAGGAGTTAAAGGATATAAATAGCTTGcaAACTGGAGGAAACTCTTGGTCAACTGGACCAgcacctcctcctcctcctggTACTCCCCCTATCAAGCATTccgagaaaaagaataaaaactctGTTGTTAGTGGAGTAGTTATAGCAGGCATAGCTTTTGGCGTACTAGCAGTAATTATAATTGTTCTTGCTCTTTCTAAAAGAAAGTCATCGATACCTTCTTCACATTTTATCGATGAAGAGAGGCGTAGCCAGCATAGATCTTTTACCCCCCTTGCATCTCAGAAGTTATCAAAAGATTCGGGCGCTGATGTCAGCAAAGAATACAAAGGATTTAAGTCATTGGATTCCACTTCAATTGACGTAAAGGCTTTGCAAAAAACTCCATCAATTGGTGTTAGGTCGTCAATCTCCGATTGTGTGCAATCCTTTAATGACAATGAGTTTGCAAATCGTCTAAATGCTAGAAGAAGTACATCAAACCGTGTTTCTACTTTTTCACTGGGAGAGTTGCACACTGCTACTGCTAATTTTGCTACAGGTCGACTTCTTGGTGAAGGATCCATAGGATGTGTTTATCGGGCTAAATATGCTGATGGAAAGGTATTCgctgtaaaaaaaatcaacccttTGCTTTTCCATGGTGGTCCTCCTGAGGAATTCTCTCAGATTGTTTCAAACATCAGCAAACTTCACCACCCAAATATTGTTGAGCTTGTCGGTTATTGTTCGGAACAGGAGCACAtgttaatatatgattatttcaGAAACGGCTCTCTCCATGACTTTTTACACTTATCAGACGACTTCAGCAAACCACTAACTTGGAATACCAGAGTCAGAATTGCTTTGGGAACAGCTCGGGCTGTTGAgTACCTACATGAAATTTGTTCTCCTCCTTTATTGCACAAGAATATCAAGTCCTCCAATATTTTGCTTGACACGGATCTGAATCCTCGTCTCTCGGACTATGGTTTGGCATCCTTCCACCagCGTACTAGCCAAAATCTTGGGGCAGGATATAACGCCCCAGAATGCACAAAACCTTCAGCCTATACCGAGAAGAGTGATGTATACAGTTTTGGGGTAGTCATGCTGGAACTTTTGACAGGTCGAATGCCTTTAGACAGTTCAAAGCCAAAACCAGAACAATGTCTCGTTCGTTGGGTCGCCCCACAGCTTCATGACATTAATGCGGTGGAAAAAATGGTGGACCCTGCTCTGCGGGGGCTTTACCCTCCCAAGTCACTCTTCCGATTTGCTGATATCATCGCCCTGTGTGTCCAGTCTGAGCCTGAATTTCGGCCACCTGTGTCGGAGTTGGTTCAGGCTTTGGTGCGATTAGTTCATCAAGTATGA 1899 0.4081 MYHNLNLARLWIALLAVSTTAVHCKTASQDVSALNVMYTSLNSPSKLSGWKSSGGDPCGDSWEGIKCSGSSITEIDLSNNNLKGDIPYQLPPNARYIDLSKNDFTGSIPYSFSQMGDLNDLRNLAHNQLKNQLGDMFGKLSKLKQLHLQNNQFTGSVNVLAELPLEDLNVENNKFSGWVPEELKDINSLQTGGNSWSTGPAPPPPPGTPPIKHSEKKNKNSVVSGVVIAGIAFGVLAVIIIVLALSKRKSSIPSSHFIDEERRSQHRSFTPLASQKLSKDSGADVSKEYKGFKSLDSTSIDVKALQKTPSIGVRSSISDCVQSFNDNEFANRLNARRSTSNRVSTFSLGELHTATANFATGRLLGEGSIGCVYRAKYADGKVFAVKKINPLLFHGGPPEEFSQIVSNISKLHHPNIVELVGYCSEQEHMLIYDYFRNGSLHDFLHLSDDFSKPLTWNTRVRIALGTARAVEYLHEICSPPLLHKNIKSSNILLDTDLNPRLSDYGLASFHQRTSQNLGAGYNAPECTKPSAYTEKSDVYSFGVVMLELLTGRMPLDSSKPKPEQCLVRWVAPQLHDINAVEKMVDPALRGLYPPKSLFRFADIIALCVQSEPEFRPPVSELVQALVRLVHQV 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3585 632 PANTHER OS01G0253100 PROTEIN 19 156 IPR045271 GO:0004714|GO:0006468
Ssu4g3585 632 Gene3D Phosphorylase Kinase; domain 1 318 434 - -
Ssu4g3585 632 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 19 156 - -
Ssu4g3585 632 Gene3D Transferase(Phosphotransferase) domain 1 435 630 - -
Ssu4g3585 632 SUPERFAMILY Protein kinase-like (PK-like) 339 625 IPR011009 -
Ssu4g3585 632 PANTHER OS01G0253100 PROTEIN 124 630 IPR045271 GO:0004714|GO:0006468
Ssu4g3585 632 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 124 630 - -
Ssu4g3585 632 Pfam Protein tyrosine and serine/threonine kinase 360 625 IPR001245 GO:0004672|GO:0006468
Ssu4g3585 632 SUPERFAMILY L domain-like 27 189 - -
Ssu4g3585 632 ProSiteProfiles Protein kinase domain profile. 358 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3585 632 MobiDBLite consensus disorder prediction 189 216 - -
Ssu4g3585 632 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Ssu4g3585 632 Gene3D Ribonuclease Inhibitor 25 224 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3585 Ssu-Chr4 86956673 86966531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3585 7 631 Strubbelig Receptor Gene Family AT1G78980 57.965 0.0 767
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Ssu4g3585 PK_Tyr_Ser-Thr 3.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3585 - - gmx:100785529 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3585 4 86956673 86966531 Ssu4g3585 4 86956673 86966531 ECH