Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3583 atgtgGCTTCCAAGTACAAAGGCATCGGTAATCAGAAAGGGAGGAGGAGGAAATGGATTGGTGGCGGTTGCTATAGAAAAGGATAATAAAGGGAGCCGACACGCTCTCAAATGGGCTGCTGATACTCTTCTTTCCAGAGGCCAAACTCTTGTTCTAATCCACGTCTTGCACACCACCTCGCCATCTCTTTCTACAGGCAGCCAGGCCATACTATGCAACACCAACTGCCCAGCTGCATCTCCACAGAGAGACCAACTTGTCAATATTACAAAGGATCTATTCCGCACCTTTCATTGCTATTGTTCACGCAAAGATATACAATGCCTTGATGTCCTTCTTGAAGATATGGATGTGGTGAAAGGCATAACAGAATATGTCTCTTATGCTGCAATTGAGAATTTGGTGCTTGGTGCAGCGTCGAGGCATGGCTTTATTAGATTCAAGTCAAGTACACCAAGCAGCATATTAAAGGGGGCGCCAGATTTCTGTACCGTGTATGTGATTTCTAAGGGGAGAATTTCTTCAGTTCGGAGTGCTTCTCGAACAGCCCCACATGCCTCCCCACTGCTGAGTCATCTACAGATTCTAAATGATGAGAATGCAAATGAATCTGAGATATCCTCTAGATGCATGAGCTTCAGAGGTTTGTTTCTTCGAAACTATGCTGTTACTGTTGCTGTTGTTTTGATCACAATCACCAGGTCACAATTTGGCAGAAGAATTGGCTTGAGTGGAAGGTCATGCATGGACTTCACCGAATCTGACTCTGACATATCATTTGTAAGCTCTGAGAGGCCCAGCAGTGTGCGTTCATCCTCTGCTTTCTATGACCATATTGAATCTGCCCGAAGCTCGCGAATTTCAACCAGTTCAGATCGTAGCTTGGGATCAACCCGTATGAGACTCAAGTTCACTGACCCCACTTCACCAAACATTTCATTTTCAGAGGAAAGCAGCCGAACATCATTTTCTTGTTCCTTGCAGGACATTGATGAAGTAGAATCTGATATGAGGAGGTTGAAGCTCGAGTTAAAGCAAACAATGGAAATGTACAGCACTGCATGCAGAGAAGCACTAACAGCACAACAGAAGTTAGGGGAACTGCACAGCTGGAGAAttgaggaagaaaagaaattagaggAGGCGCGGTTGGTCCAGGAAGCAGCAGAGGCAATTGCAGAGAAAGAGAAAGCAAGAAGTAAAGCAGCGAGGGAAACAGCTGAAGCCGCTAAGAAAATTGCAAGGGTGGaatcaaataaaagagaaagtgtTGAGCTGAAAGCTCTTAAAGAAGCAGAGGAAATGAGGAAACTATTGGATAATCTAACCCAAACTGATAAAAGATATAGGAGATACACAATTGAGGAGATTGAAACAGCTACAAACTTGTTTTCTGAATCTCAGAAAATAGGAGAAGGGGGGTATGGCCCTGTGTATAAGTGTTACCTTGATCACACTCCAGTGGCTGTGAAGGTTCTGCGTCCAGATTCTGCTCAAGGGAAGTCACAGTTTCAGCAAGAGGTTAACATACTGGGGTGCATACGGCATCCGAACATGGTGCTTCTTCTAGGAGCTTGTCCAGAGCACGGCATACTGATTTATGAATATATGGCTAATGGAAGCTTAGAAGATTGTCTGTTTGGAAAGAAGGGGGGTCCAAGTCCAATTCCAATGTGTTGGCAGCTGAGGTTTGGAATAGCTGAAGAGATAGCGACGGGGTTACTCTTCCTCCATCAGACGAAGCCTGAACCCTTGGTGCACCGCGATCTGAAACCAGGAAATATTTTACTAGGCCACAATTATGTGAGTAAGATCAGCGATGTTGGATTGGCGAGACTTCTCCCTGCTGTTGCTGAGAATGTAACACAATGCCACATGACTTCAGCAGCAGGAACATTCTGCTATATTGATCCAGAGTATCAGCAAACAGGAATGCTTGGGGTGAAGTCTGATGTGTATTCTCTGGGGATCATTCTTCTTCAAATATTGACAGCTAGGCCTGCAATGGGATTGGCTCACCAGGTTGAAGAGTCCATTGAGAAGGGCACATTTTCTGAAATGCTTGACCCATCTGTCCCCGACTGGCCTCTCGTACAAGCCCTGTGCCTCGCAAACTTGGCACTCCAATGCGCAGAACTCAGACGAAAGGACCGCCCAGACCTTGCCACACAAGTATTGCCTCAGCTCCAAATTTTGAGAGAATTTGCCCAAGACAACACCACTTCCATGCAACAGCGCCTGATAGCAAGTGGATTTGTTCCAGCAGCTCTCATTCACGATGGTCGTATCGTGCATTTTATGCTGAACATGTAA 2313 0.4479 MWLPSTKASVIRKGGGGNGLVAVAIEKDNKGSRHALKWAADTLLSRGQTLVLIHVLHTTSPSLSTGSQAILCNTNCPAASPQRDQLVNITKDLFRTFHCYCSRKDIQCLDVLLEDMDVVKGITEYVSYAAIENLVLGAASRHGFIRFKSSTPSSILKGAPDFCTVYVISKGRISSVRSASRTAPHASPLLSHLQILNDENANESEISSRCMSFRGLFLRNYAVTVAVVLITITRSQFGRRIGLSGRSCMDFTESDSDISFVSSERPSSVRSSSAFYDHIESARSSRISTSSDRSLGSTRMRLKFTDPTSPNISFSEESSRTSFSCSLQDIDEVESDMRRLKLELKQTMEMYSTACREALTAQQKLGELHSWRIEEEKKLEEARLVQEAAEAIAEKEKARSKAARETAEAAKKIARVESNKRESVELKALKEAEEMRKLLDNLTQTDKRYRRYTIEEIETATNLFSESQKIGEGGYGPVYKCYLDHTPVAVKVLRPDSAQGKSQFQQEVNILGCIRHPNMVLLLGACPEHGILIYEYMANGSLEDCLFGKKGGPSPIPMCWQLRFGIAEEIATGLLFLHQTKPEPLVHRDLKPGNILLGHNYVSKISDVGLARLLPAVAENVTQCHMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIILLQILTARPAMGLAHQVEESIEKGTFSEMLDPSVPDWPLVQALCLANLALQCAELRRKDRPDLATQVLPQLQILREFAQDNTTSMQQRLIASGFVPAALIHDGRIVHFMLNM 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3583 770 SMART serkin_6 464 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3583 770 ProSiteProfiles Protein kinase domain profile. 464 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3583 770 PANTHER OS02G0152300 PROTEIN 17 743 - -
Ssu4g3583 770 Pfam Protein kinase domain 465 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3583 770 Coils Coil 379 408 - -
Ssu4g3583 770 Gene3D Transferase(Phosphotransferase) domain 1 537 751 - -
Ssu4g3583 770 ProSitePatterns Serine/Threonine protein kinases active-site signature. 585 597 IPR008271 GO:0004672|GO:0006468
Ssu4g3583 770 PANTHER BNAA05G18880D PROTEIN 17 743 - -
Ssu4g3583 770 Coils Coil 330 350 - -
Ssu4g3583 770 CDD STK_N 20 171 - -
Ssu4g3583 770 Gene3D Phosphorylase Kinase; domain 1 416 536 - -
Ssu4g3583 770 SUPERFAMILY Protein kinase-like (PK-like) 446 733 IPR011009 -
Ssu4g3583 770 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 29 168 - -
Ssu4g3583 770 Gene3D - 21 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3583 Ssu-Chr4 86900647 86905105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3583 1 743 Receptor kinase-like Gene Family AT1G78940 57.798 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu4g3583 Pkinase 1.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3583 - - gmx:100818471 1065.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3583 4 86900647 86905105 Ssu4g3583 4 86900647 86905105 ECH
Ssu8g0010 8 272950 275630 Ssu4g3583 4 86900647 86905105 PCT