Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3578 ATGAAACTGGGCAACCCATCAAGAATTATTAGAAGGCTCCCAAGCCCTTTGAAGTTGGCATCCAGACCCTCAAGTTGGCATACCGCAAAGAAGCCATTATTGGTGGCAGGAGAATCGTCCGATGGCAGACGAAGCAAGGTTCCCAAAGGATTCCTCGCTGTTTATGTGGGTCCCGAGCTTCGAAGGTTTGTCATTCCAATAAGCTTCTTGGAGATGCCACACTTCAGGGATTTGATGGAGACCGTCGCTGAGGAATATGGGTGCCATCACCATGGTGCTATTGAAATCCCCTGCGATGAAGACTATTTTGAGCAAATTTTGATGTCGTGTTCCCAAAGATCAAAACGGATCATATCCCCTAAGAAACTTAATTGCTAA 378 0.463 MKLGNPSRIIRRLPSPLKLASRPSSWHTAKKPLLVAGESSDGRRSKVPKGFLAVYVGPELRRFVIPISFLEMPHFRDLMETVAEEYGCHHHGAIEIPCDEDYFEQILMSCSQRSKRIISPKKLNC 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3578 125 Pfam Auxin responsive protein 31 108 IPR003676 GO:0009733
Ssu4g3578 125 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 31 114 IPR003676 GO:0009733
Ssu4g3578 125 PANTHER OS02G0143300 PROTEIN 31 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3578 Ssu-Chr4 86823292 86823669 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3578 47 107 Calmodulin-binding Proteins AT3G43120 57.377 6.48e-20 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3578 K14488 - gmx:102663803 166.392