Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3564 ATGAAGCTCACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGAGTTCAGCCCTCCGACACTGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGCAAAGATAATTACCCATGTGGACAGCAATTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGTGGAGAACAAAGTCTCCGAAGATGGCTTTCTTGTTGTTATGCTTAGTAAGAGTAAAACATTGGGTTCTGCTACAGCTTCATCTGTTCAGCCTGCCAGAAATCCTTCTACGACTGTATCAACATCAAATTCCACATCTGCTTCTGATCCTCCGGTACAAACTCAGGCTGCAAACAATGTTATGTCTAGCATAGTCATCCCTACTGCAAATGTGTCTGAAGATACTTATGGTCTGGCTGCTTCAAATTTAGTTGCTGGTGGTAATCTTGAGCAGACTATTCAGCAAATTATGGACATGGGTGGTGGTAATTGGGACAGAGATACAGTTAGTCGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTGGAATCCCTGAAGCAGCAGAAATTGCTGTGCCAGTTCCTCACTACCCAGGTAGTCAGACAACTGAAACAGCTGGGATTTCTTCTGGAGCAGTTCCTGTAGGACCTAATTCATCTCCCTTAAATATGTTTCCacaggtaaaacttatgatactGAATGGATCATCAAAAGTAATTGTACCTTGTTATTTGCATCTTTTTCTGTTACTGTTTGTGCTTTATTTCAAGCTGCAACTCTCTCAGGAGACGATTTCTAGTACTGGTGCCGGACTTGGATCGCTTGACTTCCTTAGAAATAATCCCCAGGTGAGTTTGCTGCTCCATCAATTGTTATTCTCTTTTTGTTAG 909 0.4081 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKTLGSATASSVQPARNPSTTVSTSNSTSASDPPVQTQAANNVMSSIVIPTANVSEDTYGLAASNLVAGGNLEQTIQQIMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEIAVPVPHYPGSQTTETAGISSGAVPVGPNSSPLNMFPQVKLMILNGSSKVIVPCYLHLFLLLFVLYFKLQLSQETISSTGAGLGSLDFLRNNPQVSLLLHQLLFSFC 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3564 302 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Ssu4g3564 302 SUPERFAMILY Ubiquitin-like 1 87 IPR029071 -
Ssu4g3564 302 MobiDBLite consensus disorder prediction 82 112 - -
Ssu4g3564 302 CDD UBA1_Rad23_plant 142 191 - -
Ssu4g3564 302 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Ssu4g3564 302 Gene3D - 1 80 - -
Ssu4g3564 302 SMART uba_6 148 188 IPR015940 -
Ssu4g3564 302 SUPERFAMILY UBA-like 146 195 IPR009060 GO:0005515
Ssu4g3564 302 SMART ubq_7 1 75 IPR000626 GO:0005515
Ssu4g3564 302 Gene3D - 141 191 - -
Ssu4g3564 302 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 213 - -
Ssu4g3564 302 Pfam UBA/TS-N domain 148 186 IPR015940 -
Ssu4g3564 302 TIGRFAM rad23: UV excision repair protein Rad23 1 291 IPR004806 GO:0006289
Ssu4g3564 302 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 149 189 IPR015940 -
Ssu4g3564 302 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 213 - -
Ssu4g3564 302 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3564 Ssu-Chr4 86688240 86691423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3564 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.838 4.79e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3564 K10839 - gmx:100819019 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3564 4 86688240 86691423 Ssu4g3564 4 86688240 86691423 ECH
Ssu8g0036 8 685061 691974 Ssu4g3564 4 86688240 86691423 PCT