Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3563 atgaaggagaaggagaaggagaaggagacgGAAAAGAAGAAGTACCCCATTGGGGCGGAGAATTACGTTCTATACGAGGAGATTGGACAGGGCGTGAGTGCTTCTGTCCACCGCGCTCTCTGCGTCCCCTTCAACGAGGTCGTCGCCATCAAAATCCTCGACTTCGAACGTGACAATTGCGATCTgAATAACGTTTCTCGTGAGGCCCAGACAATGATCCTGGTGGACCACCCCAACGTGCTGAAATCACACTGCTCCTTCGTGAGCGAGCACAATCTGTGGGTGGTGATGCCGTTCATGGCGGGCGGTTCATGCCTCCACATACTGAAAGCCGCACACCCCGACGGGTTTGAGGAGGGTGTCATTGCAACCATTCTTAAAGAGGTGTTGAAGGGTTTGGAGTACCTTCACCATCACGGTCACATCCACCGAGACGTCAAGGCCGGCAACATTCTCATCGATTCACGCGGCGCCATCAAACTTGGCGATTTTGGTGTCTCTGCCTGCCTCTTTGATTCCGGCGACCGCCAACGCACGAGGAATACCTTCGTCGGAACCCCTTGCTGGATGGCACCCGAGGTCATGGAGCAACTCCACGGCTATAACTTCAAGGCTGACATCTGGTCATTTGGTATAACCGCCTTGGAGCTTGCTCATGGTCACGCTCCTTTCTCAAAGTTTCCACCAATGAAGGTACTGCTCATGACTCTGCAAAATGCACCCCCCGGCCTTGACTACGAAAGGGACGGCAAGTTCACTAAGTCGTTTAAGCAGATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAACGACCCTCTGCAAGCAAGTTGCTGAAGCATTCCTTCTTTAAGCAGGGTCGCAACAATGAGTATATAGTGAAAAAGCTTTTGGATGGGCTGCCTGCTTTAGGTGATCGAATGGAGGCCCTAAAGAGAAAAGAGGAAGATATGCTCGCACAAAAGAAAATGCCTGATGGAAAGATGGAGGAATTGTCACAGAATGAATACAAACGAGGAATTAGTGGCTGGAATTTCAATCTTGAAGATATGAAGGCTCAGGCTTCTTTGATCCACGATTTCGACGATGCCATATCGGATATCAACCATGCAGGAAGTTCATGTTCTTTGTCTACACTTGATGCGCAAGATAGGCAAATGCCAAGTGCAATTCACAACCCTTCTCAATCTGCTGATATgGAAGAAAATGATGAGATGCGAAATCAATCAGCTTCTGTTTCCATAGTTGACTCCGCAGTGAATGATGCCAAAACTAGGTTTGAAAAATCTGATGATGACTCTAGCATTACCAGTTCAAGCCATGAACCGCAAACTTCTTCATCCTGTCTCGATGATCATGTGGACAATAATTTGGGAGAAAAATCTGATATGGAAAATGGTGGAAGATCCGTGGAGGGAATGGCTACCCATTATTATCATAGAAGAGGATGTTCATCAAGCATCTTACCTGAAGTTACTCTTCCACCTATTCGAGCCGAAAGTGAGAAACTACAAAATCTGCCCCAGAACGTTTCAAGTTGCAGTGCAACGTCAGTTCCACAGACAGGAGAGGACGTGCTTACTGAACTTCCTTCAAGAGTCTCAAAATCATCAGCTAATTCTGATGACGCTGATGAGAAATCAAAGGTGCCAGTTGTACAGCAGAGAGGGCGTTTTAAGGTTACATCTGAGAATGTTGACCCAGAAAAAGTGGCCCCTTCTCCTGTACTGCAAAAGAGTCATAGCATGCAGGTTTTTAGCCAGCATAATGCTGCTTCTATACATCCAACTTTGCCATTATTACCAGCAGCTGAGGCCACATCATCAAATCTTTCTGGTTGCTCTCTGTTTCCTGTGTTGCACTCTGTACTGCAGACAAATATTCTTCAAAGGGAGAGCATTTTAAGTTTAATGAAGCAAATTACTGCTGGTGACTCTACAGCTGATGGCACATGTACCCCAGCACAGATAGCAGCAACTGAGAAATCTTTGCTTGAAGCAGCTCACGAGAGGGAGAAGGATTTACTTCATGAGATAACTGAGTTGCAGTGGAGGCTTATCTGTACCCAGGAAGAgcttcaaaaattgaaaacagaaAACGCCCAGGTGTGA 2109 0.4557 MKEKEKEKETEKKKYPIGAENYVLYEEIGQGVSASVHRALCVPFNEVVAIKILDFERDNCDLNNVSREAQTMILVDHPNVLKSHCSFVSEHNLWVVMPFMAGGSCLHILKAAHPDGFEEGVIATILKEVLKGLEYLHHHGHIHRDVKAGNILIDSRGAIKLGDFGVSACLFDSGDRQRTRNTFVGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHAPFSKFPPMKVLLMTLQNAPPGLDYERDGKFTKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQGRNNEYIVKKLLDGLPALGDRMEALKRKEEDMLAQKKMPDGKMEELSQNEYKRGISGWNFNLEDMKAQASLIHDFDDAISDINHAGSSCSLSTLDAQDRQMPSAIHNPSQSADMEENDEMRNQSASVSIVDSAVNDAKTRFEKSDDDSSITSSSHEPQTSSSCLDDHVDNNLGEKSDMENGGRSVEGMATHYYHRRGCSSSILPEVTLPPIRAESEKLQNLPQNVSSCSATSVPQTGEDVLTELPSRVSKSSANSDDADEKSKVPVVQQRGRFKVTSENVDPEKVAPSPVLQKSHSMQVFSQHNAASIHPTLPLLPAAEATSSNLSGCSLFPVLHSVLQTNILQRESILSLMKQITAGDSTADGTCTPAQIAATEKSLLEAAHEREKDLLHEITELQWRLICTQEELQKLKTENAQV 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3563 702 MobiDBLite consensus disorder prediction 436 452 - -
Ssu4g3563 702 MobiDBLite consensus disorder prediction 381 410 - -
Ssu4g3563 702 ProSiteProfiles Protein kinase domain profile. 22 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3563 702 Gene3D Transferase(Phosphotransferase) domain 1 103 336 - -
Ssu4g3563 702 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Ssu4g3563 702 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 11 701 - -
Ssu4g3563 702 SUPERFAMILY Protein kinase-like (PK-like) 20 284 IPR011009 -
Ssu4g3563 702 MobiDBLite consensus disorder prediction 504 551 - -
Ssu4g3563 702 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 11 701 - -
Ssu4g3563 702 Gene3D Phosphorylase Kinase; domain 1 10 99 - -
Ssu4g3563 702 MobiDBLite consensus disorder prediction 381 396 - -
Ssu4g3563 702 Pfam Protein kinase domain 22 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3563 702 MobiDBLite consensus disorder prediction 504 524 - -
Ssu4g3563 702 Coils Coil 678 702 - -
Ssu4g3563 702 CDD STKc_OSR1_SPAK 20 283 - -
Ssu4g3563 702 SMART serkin_6 22 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3563 702 MobiDBLite consensus disorder prediction 425 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3563 Ssu-Chr4 86658423 86670093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3563 11 684 MAP Kinase Kinase Kinase Kinase AT1G79640 63.836 0.0 869
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Ssu4g3563 Pkinase 4.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3563 K08835 - gmx:100780339 1280.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3563 4 86658423 86670093 Ssu4g3563 4 86658423 86670093 ECH