Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3561 ATGAGGCCGATGCAACTGCCACCGCCTTCGGGGACCGGGTCAGGCCCAGGCCCAGGCCCTAACAACAAGGAGCGTCCGCAGCGGCGCCGTAAAGACCACCTGACGTTGCCGCTGCCGCAGCGGAACACGAATTTGGCGGTGCCGCTTCCGCTGCCGCcatcgtcgtcgtcgtcgtcgtcgtcgtcgtcgacGGCGTCGTCGAGCTCCGGAGCGAGCCAGCAGGTGATCCCGTTCTCGGAGCTGGATCGGCTGAACCGCATCGGGAGCGGGAGCGGGGGGACGGTGTACAAGGTGGTCCACCGGCCTAGCGGGCGCGTGTACGCGCTGAAGGTGATTTACGGCCACCACGAGGAGTCGGTGCGTCGGCAGATCCACCGCGAAATCCAGATCCTGCGGGACGTGGACGATCCGAACGTGGTGAAGTGCCACGAGATGTACGACCAGAACAGCGAAATCCAGGTGCTGCTGGAGTTCATGGACGGGGGTTCTCTGGAAGGGAAACACATCCCGCAGGAGCAGCAGCTGGCAGATCTGTGTCGGCAGATTCTGCGTGGGCTGGCGTACCTGCACCGGCGCCACATCGTGCACAGGGACATCAAGCCGTCGAATCTGCTGATAAACTCGCGGAAGCAGGTGAAGATCGCGGACTTCGGGGTGGGAAGGATTCTGAACCAGACGATGGATCCGTGCAATTCGTCGGTGGGGACGATCGCGTACATGAGCCCGGAGAGGATCAACACGGACATCAATGACGGGCAATACGACGCGTATGCTGGGGACATATGGAGCTTTGGGGTTAGCATCCTGGAGTTCTACATGGGTAGGTTTCCGTTTGCGGTTGGGAGGCAGGGTGATTGGGCGAGCCTGATGTGTGCCATTTGTATGTCTCAGCCTCCGGAGGCTCCTCCTTCTGCTTCGCTTTACTTCAGGGATTTCATCTCCCGCTGTTTGCAGCGCGATCCCTCACGCCGCTGGTCTGCCTCCAGGTTGCTCGAACACCCCTTCATTGCTCCCACACTCTCCAACCACAATCAGCTTCCTCCCAACCTCCATCAGCTACTCCCTCCTCCTCCAAGGCCTCTTTCCTCCTAG 1092 0.5907 MRPMQLPPPSGTGSGPGPGPNNKERPQRRRKDHLTLPLPQRNTNLAVPLPLPPSSSSSSSSSSTASSSSGASQQVIPFSELDRLNRIGSGSGGTVYKVVHRPSGRVYALKVIYGHHEESVRRQIHREIQILRDVDDPNVVKCHEMYDQNSEIQVLLEFMDGGSLEGKHIPQEQQLADLCRQILRGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSFGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPPSASLYFRDFISRCLQRDPSRRWSASRLLEHPFIAPTLSNHNQLPPNLHQLLPPPPRPLSS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3561 363 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Ssu4g3561 363 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 26 353 - -
Ssu4g3561 363 MobiDBLite consensus disorder prediction 1 15 - -
Ssu4g3561 363 Pfam Protein kinase domain 83 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3561 363 Gene3D Transferase(Phosphotransferase) domain 1 163 347 - -
Ssu4g3561 363 SMART serkin_6 81 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3561 363 Gene3D Phosphorylase Kinase; domain 1 54 160 - -
Ssu4g3561 363 SUPERFAMILY Protein kinase-like (PK-like) 79 359 IPR011009 -
Ssu4g3561 363 CDD PKc_MAPKK_plant_like 79 336 - -
Ssu4g3561 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Ssu4g3561 363 ProSiteProfiles Protein kinase domain profile. 81 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3561 363 MobiDBLite consensus disorder prediction 1 74 - -
Ssu4g3561 363 MobiDBLite consensus disorder prediction 37 74 - -
Ssu4g3561 363 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 26 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3561 Ssu-Chr4 86639998 86641089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3561 1 352 MAP Kinase Kinase Gene Family AT1G51660 70.278 1.86e-169 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Ssu4g3561 Pkinase 2.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3561 K13413 - gmx:100786390 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3561 4 86639998 86641089 Ssu4g3561 4 86639998 86641089 ECH