Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3551 ATGGAAAGCAAGGGGGATCTTGATGCAGTCAGAAAGTGCTTGTCAACTAGTTTGGAAACATCAAGAGCTATTGCCTCTGCATTAGATGAGTCCGGATCAAGATTGGAGCTACTTAACCAGAGATATCTGTCCTTGCAAGCTTCCCTTAGACCCATGTCAATGCAGAACTGCTCTTTTGTCAACATTGACCACGGTTTAGACAGTGTTCTATGTTCTGCTGCTGCAGTCCTCAAGGTTTTTGACTCTGTTCATCAGTTGGAGCATTCTCTCTTGACAGACCCTTGTTCTGATCTACACACCTATGTCTCAGACACAAAGAAGCTTGAGGAAGCACTGAAGCTTCTCACTGATAATTGCAGGTTAGCAGTTGGCTGGTTGAAGGACGTTTTTGAGAAAGCAATCACCAATGAGCTTTACCTATTGAATGTGAAGAAATCTTTGAGAATATTGCAAGAATTTCAGGCCAGGGAGGAAGGTGCTCGCCTTGATGGAGGCCTTCTTAGTACTGCTTTTGACAAACTAGAGCTTGAGTTCCACAGGCTTTTGATAGCAAACTCGGTGCCTCTTCCTTTGGTTTCATTGACATCACACATTGGCCAGCAAGCCAGTATTGCCAAACAAGCTTTGCCATTGACAAGTTCTTTAGCAGGGAAGTTGCATGCCATCATTGAGAGATTAAATGCTAATGGCAGGCTGGACAAATGTCAATCTATATATGTTGAAGTTCGAGGTATGAATGCTTGTCGAAGCTTGAAGACTTTAGATTTGAGTTACCTTGAGATTCCAACAGCTGAATTTGAGGCTATGCGGTGTATAGAGAGTTACATAGATCAATGGGGTAGCCATTTCGAGTTGGTTGTGAAGCAACTGCTCGAGATTGAGTGCAGGCTCTCTACTATTGTCTTTGAAAAAATTGGTCCAGAAGCATGGATGGGGTGTTTTGCAAAGATTGCCATTGAATCAGgaattctttcttttattcgATTTGGAAGGATTGTTACTGAGAGGAAAAATGACCCCTTCAAGTTGTTTAACCTGCTGTCCATATTCAGGGTCTTAAATGGCCTAAGACTAAAATTCAACCAGCTTTTCAGTGCAAAAGCTTGTAAAGAAATTAGAACTGCGACAGAGGATCTTATCAAGAAAGTAGTTAATGGTGCTAGTGAGATATTCTGGCAACTTCCAGCACAAGTGAAGTTGCAAAGGCCAACTTCTCCTCCCCCTGATGGCAGCGTTCCCAGGCTGGTAAGCTTTGTAACTGATTACTGCAATCAGCTGCTTGGCGATGCCTATAGGCCACATTTGACACAGGTTTTGGGAATACATCTTAGCTGGAGAAAGGAAGCATACGAAGAGGGTATTGTTTTATGTCAAATATATAACGCAATTACGGAGGTTGCGGTAAATTTGGATGCTTGGTCGAAGGCCTATGAAGATATCACTCTGTCCTACctttttatgatgaataatcACTGTCATTTCTGCAATTTGAGGGGTACTGTGCTTGGAAACATGATGGGAGATTCCTGGTTAGGAGCACACGAACAATATAAGGACTATTATGCAGCACTTTATTTGAGGAATAGCTGGGGAAAGCTTCTACCTATTCTTGTAGTTCAAAAGGACATACTTTCATCCTCCGGTGCAAGTGTGACTAGCCAAGATTTGGCAAAGCAACTAAATGCTTTCAATCTAGCTTTTGATGAAATGTACAAGAAGCAATCTAATTGGGTAATCTGCGATGAGACCTTGAGGGAAAATGTATGCAAGCATTTGGTGGAAGGTATTATACCAATCTATAGGGCCTATGTCAAGAATTATTGTTTGTCAACTGACAATGATGCTAAGGTTGACAAGCATATGAAATATACGGCGCAGTGTTTGGAGAACAAAATTAGGTCACTGTTTCAGCCCATGCAGAGGAAGGGTAGTAGCATTAAACAGGCCGACttgattagtaaaataaaagaagtcaGTCATCAATTTCGCTTGACTCTAGCTgcactatga 2010 0.4085 MESKGDLDAVRKCLSTSLETSRAIASALDESGSRLELLNQRYLSLQASLRPMSMQNCSFVNIDHGLDSVLCSAAAVLKVFDSVHQLEHSLLTDPCSDLHTYVSDTKKLEEALKLLTDNCRLAVGWLKDVFEKAITNELYLLNVKKSLRILQEFQAREEGARLDGGLLSTAFDKLELEFHRLLIANSVPLPLVSLTSHIGQQASIAKQALPLTSSLAGKLHAIIERLNANGRLDKCQSIYVEVRGMNACRSLKTLDLSYLEIPTAEFEAMRCIESYIDQWGSHFELVVKQLLEIECRLSTIVFEKIGPEAWMGCFAKIAIESGILSFIRFGRIVTERKNDPFKLFNLLSIFRVLNGLRLKFNQLFSAKACKEIRTATEDLIKKVVNGASEIFWQLPAQVKLQRPTSPPPDGSVPRLVSFVTDYCNQLLGDAYRPHLTQVLGIHLSWRKEAYEEGIVLCQIYNAITEVAVNLDAWSKAYEDITLSYLFMMNNHCHFCNLRGTVLGNMMGDSWLGAHEQYKDYYAALYLRNSWGKLLPILVVQKDILSSSGASVTSQDLAKQLNAFNLAFDEMYKKQSNWVICDETLRENVCKHLVEGIIPIYRAYVKNYCLSTDNDAKVDKHMKYTAQCLENKIRSLFQPMQRKGSSIKQADLISKIKEVSHQFRLTLAAL 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3551 669 Pfam Exo70 exocyst complex subunit 278 633 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu4g3551 669 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 4 661 - -
Ssu4g3551 669 PANTHER EXOCYST COMPLEX PROTEIN EXO70 4 661 IPR004140 GO:0000145|GO:0006887
Ssu4g3551 669 SUPERFAMILY Cullin repeat-like 76 636 IPR016159 -
Ssu4g3551 669 Gene3D Exocyst complex component Exo70 131 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3551 Ssu-Chr4 86555038 86557047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3551 9 669 EXO70 exocyst subunit family AT4G31540 48.593 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3551 K07195 - gmx:121175138 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3551 4 86555038 86557047 Ssu4g3551 4 86555038 86557047 ECH