Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3548 ATGAACGGCCACCTCACCGTAACCATCGGTAACAGGCACCCTGATGACGATGACCTCCCTCCCtccgacaacaacaacaacaccaacaaccacTATGATGATGACGAAGAACTCGTGGATCCCGACGATCCTTTCGACATTACACAAACTAAGAACGCATCGCACGAGACGCTTCGCCGTTGGAGACAAGCAGCACTCGTGCTCAACGCGTCCAGGCGTTTTAGATATACTTTGGActtgaaaaaggaagaagagaaagagcaaaAAAAACACTTGATTAGAGCCCATGCACAAGTCATAAGAgcAGCACTGCTTTTCAGATTGGCTGGTGAACGTGAAATAGTGATAAGTACAGCAGTGACACCCCCAACTCCAGTTGGTGACTATGCTATTGGGCTCGAACAACTTGTTTCAATGTCTAAGGATCAGAATATTTCTGCTTTACAACAATATGGAGGGATTAGAGGcgtatcaaatttaataaaatctaatccGGATAAAGGTATTAGTGGAGATGATGCAGATctgttaaaaaggaaaaatgcatTTGGAACTAATACATATCCTCGGAAAAAAGGGAGAAGTTTCTGGAGGTTTTTATGGGAAGCTTGGCAAGATCTGACTCTCATAATATTGATAATAGCTGCTGCAGTGTCATTGGCACTTGGAATTAAAACAGAGGGTTTGGAAGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTTTTCTTGTCATTGTAGTTACGGCTACAAGTGATTATCGGCAATCTCTTCAGTTTCAGAATTTGAATgcagaaaaacaaaatatacaattggAGGTTGTTAGAGGTGGGAGAACAATTAAAATATCGATATTTGATATTGTTGTTGGTGATGTTATACCCCTTAAAATCGGAGATCAGGTTCCTGCTGATGGAGTATTAATCACGGGCCATTCACTTGCAATTGATGAATCCAGTATGACTGGTGAAAGCAAAATTGTTCATAAGGATCACAAAGCACCATTTTTGATGTCTGGTTGCAAAGTAGCAGATGGAGTTGGTGTTATGCTGGTAACTGGTGTTGGTATAAATACTGAATGGGGATTGTTGATGGCAAGTATCTCAGAGGATACCGGAGAAGAGACTCCATTACAGGTACGTTTGAATGGAGTAGCAACTTTTATTGGTGTAGTTGGGCTTACTGTAGCTGTTTTGGTGCTTGCTGTCCTCTTGGGCAGATACTTTTCTGGCCATACCAAAGATGTACATGGAAACGTCCAATTTGTTGCCGGAACGACTAGTGTTAGCAATGCAGTAGATGGGGTGATCAAAATTTTTACCATTGCAGTCACAATTGTGGTCGTTGCTGTGCCTGAAGGTCTACCTTTGGCTGTTACCTTAACCTTGGCATACTCAATGCGGAAAATGATGGCAGACAAGGCCTTGGTACGACGGCTATCAGCCTGCGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATGAGATGACTGTAGTCGAGGCATATGTTGGGAGGATGAAACTAAATCCACCGGATGACTCATCAAAGTTGCATCCAGAAGCATTGTCTCTGATAAATGAGGGCATTGCACAGAATACAACTGGAAATGTTTTTGTACCTAAGGATGGCGGGCAGACGGAGGTGTCAGGATCTCCTACAGAGAAGGCAATTCTTTCATGGGCAGTCAAGTTGGGTATGAATTTTGATGTTATCAGATCAAATTCGACAGTTCTCCACGTCTTCCCCTTCAATTCTGAGAAAAAGCGAGGTGGTGTTGCTTTGAAGCTGGGGGATTCTGGAATACATATACATTGGAAGGGAGCTGCAGAGATAGTTCTAGGAACATGTACTCAATATCTTGATTCAAATGGTCAATTGCAATCCATTGAAGAGGAGAAGGCTTTTTTCAAGGAAGCTATTGATGACATGGCTGCTCGCAGCTTGCGTTGTGTTGCCATTGCATATAGATCATATGAATTAGACAAAGTTCCATCTAATGAGCAGGATTTAGACCAATGGTCCTTACCAGAACATGAGCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGTGTCAAAGATGCTGTAAAAGTATGTACTGATGCTGGTGTCAAGGTACGCATGGTTACTGGAGACAACCTTCAAACAGCAAAGGCAATAGCTCTGGAGTGTGGCATTTTGGCTTCAAATGAAGATGCTGTTGAGCCAAAtataattgaaggaaagaaattcCGTGAACTATctgaaaaggaaagagaagatatTGCCAAGAAAATAACTgtgATGGGGAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCGCTACGTAAAGGAGGTGAAGTTGTTGCTGTCACAGGAGATGGCACCAATGATGCTCCTGCACTTCATGAGgcAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTCCGCTGGGGCCGCTCTGTATATGCAAATATTCAGAAATTTATCCAGTTCCAGCTTACAGTTAATGTTGCTGCTCTTGTAATAAATGTTGTGGCAGCAATAACTTCAGGTGCTGTTCCTTTAAATGCAGTACAGCTTTTGTGGGTCAACCTTATCATGGATACACTTGGGGCGCTTGCACTGGCTACTGAACCGCCAACAGACCACCTAATGCACAGATCACCAGTTGGCCGAAGGGAACCtcttataacaaatataatgtGGAGAAACTTGTTAGTACagGCTGTCTATCAAATCGCTGTTCTTCTCGTTCTTAACTTCTGTGGTGAAAGTTTTCTACCTAACCAAGATACTAGAGCTTATGCCTTTCGAGTGAAGAATACTTTAATATTCAACGCGTTCGTCATGTGCCAAATATTCAATGAATTCAATGCTCGGAAACCCGATGAAATGAATGTTTTTCGTGGAGTGACGAAGAACCGTCTTTTCATGGGAATCGTTGGAATGACCTTTATACTTCAGATAATCATCATCGAGTTCCTTGGAAAGTTCACCTCAACAGTGAAGCTCGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGCTGGCCCCTTGCTGTTGCCGGAAAATTCATTCCAGTTCCCAAAACACCATTGTCTCGTTACTTCTTGAAGCCACTCAGGCGATTAAGGAGGTCTCGTGCTACACAATAG 3264 0.405 MNGHLTVTIGNRHPDDDDLPPSDNNNNTNNHYDDDEELVDPDDPFDITQTKNASHETLRRWRQAALVLNASRRFRYTLDLKKEEEKEQKKHLIRAHAQVIRAALLFRLAGEREIVISTAVTPPTPVGDYAIGLEQLVSMSKDQNISALQQYGGIRGVSNLIKSNPDKGISGDDADLLKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAAVSLALGIKTEGLEEGWYDGGSIAFAVFLVIVVTATSDYRQSLQFQNLNAEKQNIQLEVVRGGRTIKISIFDIVVGDVIPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDHKAPFLMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGVVGLTVAVLVLAVLLGRYFSGHTKDVHGNVQFVAGTTSVSNAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNEMTVVEAYVGRMKLNPPDDSSKLHPEALSLINEGIAQNTTGNVFVPKDGGQTEVSGSPTEKAILSWAVKLGMNFDVIRSNSTVLHVFPFNSEKKRGGVALKLGDSGIHIHWKGAAEIVLGTCTQYLDSNGQLQSIEEEKAFFKEAIDDMAARSLRCVAIAYRSYELDKVPSNEQDLDQWSLPEHELVLLAIVGIKDPCRPGVKDAVKVCTDAGVKVRMVTGDNLQTAKAIALECGILASNEDAVEPNIIEGKKFRELSEKEREDIAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAITSGAVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLLVQAVYQIAVLLVLNFCGESFLPNQDTRAYAFRVKNTLIFNAFVMCQIFNEFNARKPDEMNVFRGVTKNRLFMGIVGMTFILQIIIIEFLGKFTSTVKLDWKLWLASLGIGLVSWPLAVAGKFIPVPKTPLSRYFLKPLRRLRRSRATQ 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3548 1087 Coils Coil 636 656 - -
Ssu4g3548 1087 Pfam E1-E2 ATPase 271 472 - -
Ssu4g3548 1087 Gene3D - 491 846 IPR023214 -
Ssu4g3548 1087 PRINTS P-type cation-transporting ATPase superfamily signature 801 820 - -
Ssu4g3548 1087 PRINTS P-type cation-transporting ATPase superfamily signature 494 508 - -
Ssu4g3548 1087 PRINTS P-type cation-transporting ATPase superfamily signature 825 837 - -
Ssu4g3548 1087 PRINTS P-type cation-transporting ATPase superfamily signature 318 332 - -
Ssu4g3548 1087 PRINTS P-type cation-transporting ATPase superfamily signature 694 705 - -
Ssu4g3548 1087 PRINTS P-type cation-transporting ATPase superfamily signature 716 726 - -
Ssu4g3548 1087 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 501 698 IPR023299 GO:0000166
Ssu4g3548 1087 Pfam Ca2+-ATPase N terminal autoinhibitory domain 42 85 IPR024750 GO:0005516
Ssu4g3548 1087 Gene3D - 175 370 - -
Ssu4g3548 1087 PANTHER CATION TRANSPORTING ATPASE 42 1079 - -
Ssu4g3548 1087 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 768 888 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g3548 1087 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 424 519 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g3548 1087 Pfam haloacid dehalogenase-like hydrolase 491 815 - -
Ssu4g3548 1087 PANTHER CALCIUM-TRANSPORTING ATPASE 42 1079 - -
Ssu4g3548 1087 PRINTS Sodium/potassium-transporting ATPase signature 613 631 - -
Ssu4g3548 1087 PRINTS Sodium/potassium-transporting ATPase signature 237 257 - -
Ssu4g3548 1087 PRINTS Sodium/potassium-transporting ATPase signature 487 508 - -
Ssu4g3548 1087 SFLD p-type atpase 476 853 IPR044492 -
Ssu4g3548 1087 Pfam Cation transporting ATPase, C-terminus 886 1061 IPR006068 -
Ssu4g3548 1087 SUPERFAMILY Calcium ATPase, transmembrane domain M 152 1064 IPR023298 -
Ssu4g3548 1087 SMART Cation_ATPase_N_a_2 150 224 IPR004014 -
Ssu4g3548 1087 SUPERFAMILY Calcium ATPase, transduction domain A 272 367 IPR008250 -
Ssu4g3548 1087 ProSitePatterns E1-E2 ATPases phosphorylation site. 496 502 IPR018303 -
Ssu4g3548 1087 Gene3D - 202 1052 - -
Ssu4g3548 1087 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 141 1064 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Ssu4g3548 1087 SFLD C1.7: P-type atpase like 476 853 - -
Ssu4g3548 1087 CDD P-type_ATPase_Ca_PMCA-like 176 934 - -
Ssu4g3548 1087 Pfam Cation transporter/ATPase, N-terminus 153 219 IPR004014 -
Ssu4g3548 1087 Gene3D - 504 701 IPR023299 GO:0000166
Ssu4g3548 1087 MobiDBLite consensus disorder prediction 1 44 - -
Ssu4g3548 1087 SUPERFAMILY HAD-like 492 906 IPR036412 -
Ssu4g3548 1087 Gene3D - 53 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3548 Ssu-Chr4 86510473 86528812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3548 2 1084 Primary Pumps ATPases AT3G21180 76.845 0.0 1685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3548 K01537 - gmx:100777143 1910.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3548 4 86510473 86528812 Ssu4g3548 4 86510473 86528812 ECH