Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3546 ATGGGTGAAGAAGCGAAGACAATTGTGCCAGAGTCCGTGTTGAAGAAGCGGAAGAGGGAGGAGGAATGGGCGTTGGCCAAGAAACAAGAACTGGAAGCTGCTAAGAAGAAGAGAGCCGAGAGCCGCAAGCTCATTTATAGCAGAGCTAAGCAATATGCTAAGGAGTACGATGAGCAGgaaaagGAATTGATTCGGTTGAAGCGCGAGGCCAAGTTGAAAGGTGGATTTTATGTCGATCCAGAGGCTAAGCTCCTGTTTATTATTCGCATTCGTGGTATTAATGCCATGCACCCCAAGACAAGGAAGATCTTGCAGCTGTTGCGATTGAGACAGATTTTCAATGGTGTATTTCTTAAAGTTAACAAAGCCACAATGAACATGCTGCACAGAGTTGAGCCTTATGTGACTTATGGATACCCAAATCTGAAGAGTGTGAGAGAACTTATTTATAAGAGAGGTTATGGAAAGCTAAACAAGCAGAGAATTGCTCTAACTGACAACTCCGTCATTGAGCAGGCACTGGGCAAATATGGAATCATATCTACTGAAGATCTTATCCATGAGATTATCACTGTTGGACCTCACTTTAAGGCGGCTAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTTTGGGTGGcttaaagaagaagaggaaccaCTATGTTGAAGGAGGTGATGCTGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAATTGA 732 0.4235 MGEEAKTIVPESVLKKRKREEEWALAKKQELEAAKKKRAESRKLIYSRAKQYAKEYDEQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSVIEQALGKYGIISTEDLIHEIITVGPHFKAANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3546 243 TIGRFAM uL30_euk: 60S ribosomal protein uL30 10 243 IPR005998 GO:0000463|GO:0003735|GO:0022625
Ssu4g3546 243 ProSitePatterns Ribosomal protein L30 signature. 103 135 IPR018038 -
Ssu4g3546 243 Coils Coil 49 73 - -
Ssu4g3546 243 PANTHER 60S RIBOSOMAL PROTEIN L7 6 243 IPR039699 -
Ssu4g3546 243 Gene3D - 84 243 IPR036919 -
Ssu4g3546 243 Pfam Ribosomal L30 N-terminal domain 9 80 IPR012988 -
Ssu4g3546 243 PANTHER 60S RIBOSOMAL PROTEIN L7 6 243 - -
Ssu4g3546 243 CDD Ribosomal_L7_archeal_euk 84 243 IPR035808 -
Ssu4g3546 243 Pfam Ribosomal protein L30p/L7e 85 135 IPR016082 -
Ssu4g3546 243 SUPERFAMILY Ribosomal protein L30p/L7e 84 243 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3546 Ssu-Chr4 86495684 86497260 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3546 4 243 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.833 5.22e-156 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3546 K02937 - gmx:100813342 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3546 4 86495684 86497260 Ssu4g3546 4 86495684 86497260 ECH