Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3544 ATGTTAGAAGCCCCAGCACAGGTAGTACAAAACCCTAGCTATCTCATTCCTCAACGTTGTCAAGCCCGCCTACAAAACCCTAGTTCGCAGTCGCAGAAGAGGCCAGAGCTCGAGATGGGTGAAGAAGCGAAGACAATTGTGCCAGAGTCCGTGTTGAAGAAGCGGAAGAGGGAGGAGGAATGGGCGTTGGCCAAGAAACAAGAACTGGAAGCTGCTAAGAAGAAGAGAGCCGAGAGCCGCAAGCTCATTTATAGCAGAGCTAAGCAATATGCTAAGGAGTACGATGAGCAGgaaaagGAATTGATTCGGTTGAAGCGCGAGGCCAAGTTGAAAGGTGGATTTTATGTCGATCCAGAGGCTAAGCTCCTGTTTATTATTCGCATTCGTGGTATTAATGCCATGCACCCCAAGACAAGGAAGATCTTGCAGCTGTTGCGATTGAGACAGATTTTCAATGGTGTATTTCTTAAAGTTAACAAAGCCACAATGAACATGCTGCACAGAGTTGAGCCTTATGTGACTTATGGATACCCAAATCTGAAGAGTGTGAGAGAACTTATTTATAAGAGAGGTTATGGAAAGCTAAACAAGCAGAGAATTGCTCTAACTGACAACTCCGTCATTGAGCAGGCACTGGGCAAATATGGAATCATATCTACTGAAGATCTTATCCATGAGATCATCACTGTTGGACCTCACTTTAAGGAGGCTAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTTTGGGTGGcttaaagaagaagaggaaccaCTATGTTGAAGGAGGTGATGCTGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAATTGA 846 0.4362 MLEAPAQVVQNPSYLIPQRCQARLQNPSSQSQKRPELEMGEEAKTIVPESVLKKRKREEEWALAKKQELEAAKKKRAESRKLIYSRAKQYAKEYDEQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSVIEQALGKYGIISTEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3544 281 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 29 281 - -
Ssu4g3544 281 Coils Coil 87 111 - -
Ssu4g3544 281 SUPERFAMILY Ribosomal protein L30p/L7e 122 281 IPR036919 -
Ssu4g3544 281 Pfam Ribosomal protein L30p/L7e 123 173 IPR016082 -
Ssu4g3544 281 Gene3D - 122 222 IPR036919 -
Ssu4g3544 281 Gene3D - 223 281 IPR036919 -
Ssu4g3544 281 PANTHER 60S RIBOSOMAL PROTEIN L7 29 281 IPR039699 -
Ssu4g3544 281 Pfam Ribosomal L30 N-terminal domain 47 118 IPR012988 -
Ssu4g3544 281 ProSitePatterns Ribosomal protein L30 signature. 141 173 IPR018038 -
Ssu4g3544 281 TIGRFAM uL30_euk: 60S ribosomal protein uL30 48 281 IPR005998 GO:0000463|GO:0003735|GO:0022625
Ssu4g3544 281 MobiDBLite consensus disorder prediction 22 42 - -
Ssu4g3544 281 CDD Ribosomal_L7_archeal_euk 122 281 IPR035808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3544 Ssu-Chr4 86464838 86466687 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3544 42 281 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 86.250 1.46e-156 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3544 K02937 - gmx:100813342 416.772