Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3541 ATGGATGGTATTCATGCGGGTGATTCTCGGATACACATTAGTGATGGACAGCATCCTATACATGTGCCATATGTGCAAGAACATGAGCATCATGGACTGCACCATATGAGCAATGGGAATGGGATTGATGATGATCAGAATGATGGAGCTGATACTAACTGTGGTGGAAGTGAGAGTGTGGAAGGTGAACTCCCCTCCAACCATGGAAATCTCCCTGACAATCACACTGCAATAATGGATCATGGGGGTGATGGTGGGGATCAGCTTACGTTGTCTTTTCAGGGTCAGGTTTATGTCTTTGACTCTGTGTCACCAGAAAAGGTTCAAGCTGTGCTACTGTTACTGGGAGGCCGCGAAATACCTCCAACTATGCCTGCCATCCCAGTATCTCCTCACCATAATAACCGGGGATTTACTGGTACTCCGCAAAAATTCAGTGTCCCTCAGAGGTTAGCTTCATTGATTAGGTTTCGTGAAAAGCGGAAGGAAcgaaattttgacaaaaaaattcggTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAAAGAAATAAAGGTCAGTTTACATCTTCCAAGTCCAATCATGATGAATCTGCATCAACTGTGACAAATTGGGGGACGAATGAAAACTGGACAGAGGACAATAATGGATCCCAGCAGCAAGATATTGTTTGTAGGCACTGTGGCATCAGTGAAAAGTGCACACCAATGATGCGACGCGGGCCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGTCTTATGTGGGCAAATAAGGGCACCCTGAGGGACCTATCAAGGGCGGCACCCTTGTCTGGACATAATTCCTCATTAATCAAGAATGAGAGTAAAAGTTTAGAGGCCAACCAGATAGTCCATAGAGTTGCTGGAGAAGCTGATGATTCGTCGTcataa 918 0.4434 MDGIHAGDSRIHISDGQHPIHVPYVQEHEHHGLHHMSNGNGIDDDQNDGADTNCGGSESVEGELPSNHGNLPDNHTAIMDHGGDGGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTMPAIPVSPHHNNRGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDESASTVTNWGTNENWTEDNNGSQQQDIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAAPLSGHNSSLIKNESKSLEANQIVHRVAGEADDSSS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3541 305 MobiDBLite consensus disorder prediction 40 73 - -
Ssu4g3541 305 SMART tify_2 82 117 IPR010399 -
Ssu4g3541 305 Pfam GATA zinc finger 226 262 IPR000679 GO:0006355|GO:0043565
Ssu4g3541 305 PANTHER GATA TRANSCRIPTION FACTOR 28 6 293 IPR045280 GO:0006355
Ssu4g3541 305 MobiDBLite consensus disorder prediction 32 83 - -
Ssu4g3541 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 275 - -
Ssu4g3541 305 ProSitePatterns GATA-type zinc finger domain. 226 253 IPR000679 GO:0006355|GO:0043565
Ssu4g3541 305 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Ssu4g3541 305 CDD ZnF_GATA 225 285 IPR000679 GO:0006355|GO:0043565
Ssu4g3541 305 Pfam CCT motif 150 192 IPR010402 GO:0005515
Ssu4g3541 305 ProSiteProfiles GATA-type zinc finger domain profile. 220 268 IPR000679 GO:0006355|GO:0043565
Ssu4g3541 305 MobiDBLite consensus disorder prediction 188 219 - -
Ssu4g3541 305 PANTHER GATA TRANSCRIPTION FACTOR 28 6 293 - -
Ssu4g3541 305 Gene3D - 216 278 IPR013088 GO:0006355|GO:0008270
Ssu4g3541 305 Pfam tify domain 87 116 IPR010399 -
Ssu4g3541 305 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Ssu4g3541 305 SMART GATA_3 220 273 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3541 Ssu-Chr4 86429798 86436542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3541 1 303 Tify Gene Family AT1G51600 62.866 5.21e-136 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu4g3541 CCT 8.8e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3541 - - pvu:PHAVU_008G254600g 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3541 4 86429798 86436542 Ssu4g3541 4 86429798 86436542 ECH