Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3538 ATGAAGGGCAAGGCCTGCGAGCTTTGCGATCAACAAGCTTCTCTCTATTGTCTCTCCGATTCCGCATTTCTCTGCTCCAACTGCGACGTCACCGTGCACGGCGCCAACTTCCTCGTAGCTCGCCACCGCCGCCACATTCTCTGTTCCAAATGCAACCGTTTCGCCGGAATTCACATCTCCGGCGCTATATCCCGCCGCCTCCCGTCTACCTGCAGGTCTTGCTCGCCGGTGAATCCTTCCGGTGACTCCGACTCCCTCCCTTCCTCCTCCTCTACCTGCGAGTCTTGCGCTACGGTTCCGAAGAAGATTAAGGTGAGGCGCACGACGGCGGGGAAGAGGAGGAGTTGTTCGAGTTCCATGACCGACGACGCATCTCCGGCGGCGAAGAAGAGACGGAGAAACGTCGGATCGGTGGCGGAGGAGTTGTTTGAGAAATGGAGCAGAGAGATGgggttagggttagggttagggGTGAAGGGCAGTCGCGTGGCGTCGCACGCTATGAGGGTGTGCCTTGGAAAGTGGACGTGTCTTCCGTTTAGGGTGGCCGCTGCGACGTCGTTTTGGTTGGGCCTCAGATTTTGTGGGGACGGACGCCTCGCCACGTTTCAGAATCTGACGAGGTTGGAGGCAATCTCCGGGGTGCCAGCTAAGCTCATTCTGGCCGCACATGCCAACCTCGCACGTGCCTTCCCGCACCGCCGCGAATTGCAGGAAGGATGGGGCGAGTCCTAG 735 0.5769 MKGKACELCDQQASLYCLSDSAFLCSNCDVTVHGANFLVARHRRHILCSKCNRFAGIHISGAISRRLPSTCRSCSPVNPSGDSDSLPSSSSTCESCATVPKKIKVRRTTAGKRRSCSSSMTDDASPAAKKRRRNVGSVAEELFEKWSREMGLGLGLGVKGSRVASHAMRVCLGKWTCLPFRVAAATSFWLGLRFCGDGRLATFQNLTRLEAISGVPAKLILAAHANLARAFPHRRELQEGWGES 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3538 244 PANTHER B-BOX ZINC FINGER PROTEIN 32-LIKE 1 230 - -
Ssu4g3538 244 CDD Bbox1_BBX-like 5 45 - -
Ssu4g3538 244 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Ssu4g3538 244 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Ssu4g3538 244 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 230 - -
Ssu4g3538 244 MobiDBLite consensus disorder prediction 107 133 - -
Ssu4g3538 244 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3538 Ssu-Chr4 86384972 86385706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3538 6 244 C2C2-CO-like Transcription Factor Family AT3G21150 28.745 6.68e-23 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu4g3538 zf-B_box 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3538 - - gmx:102667703 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3538 4 86384972 86385706 Ssu4g3538 4 86384972 86385706 ECH