Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3531 ATGGCGAAGAAATCGCAGAAAAACCTCAAGAACCCTATTGCCATGACCAACAACAACAGCAGTGGGAAGCGGACACGCAAAAGCGTCCCAAGAGACTCACCTCCACAACGAAGCTCAATCTATAGGGGTGTCACAAGGCATCGATGGACTGGTCGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCACAAAGCAAGAAAGGAAGACAAGTATATCTAGGGGCATATGATGATGAAGAAGCCGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGATACCATTCTCAATTTTCCATTATCAAATTATGAGGAGAAGCTCAAGGAGATGGAGGGCCAGTCAAAAGAAGAATATATTGGATCCTTGAGAagAAAAAGCAGTGGGTTCTCTCGAGGAGTTTCAAAATACAGAGGCGTAGCAAGACACCACCATAACGGAAGATGGGAAGCTCGAATTGGCAGGGTCTTTGGCAACAAATATCTATACCTTGGAACTTACGCTACACAAGAAGAGGCAGCCGAAGCATATGACATGGCAGCCATAGAACACAGAGGACTTAACGCCGTTACAAACTTTGACCTCAGCCGTTATATCAATTGGCTACGTCCTAAAAGCGAAGAAAACCATCAAAATCCTAGCAATGAAAATGTAAACTCTAATCCTGAACTTGAGCTAGGGTTTGTTTCCCATGAGCTTGGTTCAGCCAATGATGAGATGACAGCAGAGGCTGTAGAACGATCTGGTGGTGGTGCCTCAACATCTTCTGCACTAGGGATACTCTTACAATCGTCCAAATTCAAGGAAATGATAGAAAAGACTTCATCAGCTACAGATTACCCTCCACCACCTGCAGAATCAAATCCTTCTCGTCGCACATTCCCTGAAGACATTCAAACAACCTTTGAAAGTCAAGATTCAGGTAGCTACACCGAAAATGATGATATCATTTTTGGTGACTTGGGCTCGTTTGGTGCACCAATTTTTCATTACGAGCTTGATGCTTAG 1026 0.4415 MAKKSQKNLKNPIAMTNNNSSGKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQDTILNFPLSNYEEKLKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAEAYDMAAIEHRGLNAVTNFDLSRYINWLRPKSEENHQNPSNENVNSNPELELGFVSHELGSANDEMTAEAVERSGGGASTSSALGILLQSSKFKEMIEKTSSATDYPPPPAESNPSRRTFPEDIQTTFESQDSGSYTENDDIIFGDLGSFGAPIFHYELDA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3531 341 Gene3D AP2/ERF domain 141 202 IPR036955 GO:0003700|GO:0006355
Ssu4g3531 341 Gene3D AP2/ERF domain 40 108 IPR036955 GO:0003700|GO:0006355
Ssu4g3531 341 ProSiteProfiles AP2/ERF domain profile. 142 200 IPR001471 GO:0003700|GO:0006355
Ssu4g3531 341 MobiDBLite consensus disorder prediction 278 319 - -
Ssu4g3531 341 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Ssu4g3531 341 PRINTS Ethylene responsive element binding protein signature 88 108 IPR001471 GO:0003700|GO:0006355
Ssu4g3531 341 MobiDBLite consensus disorder prediction 9 24 - -
Ssu4g3531 341 MobiDBLite consensus disorder prediction 1 43 - -
Ssu4g3531 341 CDD AP2 141 202 IPR001471 GO:0003700|GO:0006355
Ssu4g3531 341 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 326 - -
Ssu4g3531 341 MobiDBLite consensus disorder prediction 298 318 - -
Ssu4g3531 341 Pfam AP2 domain 40 98 IPR001471 GO:0003700|GO:0006355
Ssu4g3531 341 Pfam AP2 domain 141 191 IPR001471 GO:0003700|GO:0006355
Ssu4g3531 341 SUPERFAMILY DNA-binding domain 39 108 IPR016177 GO:0003677
Ssu4g3531 341 ProSiteProfiles AP2/ERF domain profile. 40 106 IPR001471 GO:0003700|GO:0006355
Ssu4g3531 341 SUPERFAMILY DNA-binding domain 141 202 IPR016177 GO:0003677
Ssu4g3531 341 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 326 - -
Ssu4g3531 341 SMART rav1_2 142 206 IPR001471 GO:0003700|GO:0006355
Ssu4g3531 341 SMART rav1_2 40 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3531 Ssu-Chr4 86306674 86310585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3531 6 204 AP2-EREBP Transcription Factor Family AT5G57390 66.834 3.22e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ssu4g3531 AP2 4.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3531 K09285 - gmx:100807781 486.878