Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3529 ATGGAGAAGTACGAGAAACTGGAGAAGGTGGGAGAAGGGACATACGGGAAGGTGTACAAGGCACGGGAGAAGGCGAGTGGGAAAGTGGTGGCTTTGAAGAAGACGCGTCTGGAGATGGACGAGGAGGGTGTCCCTCCCACTGCCCTCCGAGAGGTGTCTCTCCTTCAGTTGCTGTCCCAGTCCCTGTACATCGTCCGTCTCCTCTCCGTGGAACACGTGGACAAGGTCCCAAAGGCCCAGGCCGCATCCGCCAACCCGCACACCAAGCCCATTCTGTACCTCGTCTTCGAGTACCTCGACACCGATCTCAAGAAGTTCATCGATTCCCACCGCAAGGGCCCCAACCCCAGGCCCCTCCCCGCTTCCCTCGTCAGGAGCTTCCTCTTCCAGCTCTGTAAGGGCGTTGCCCACTGCCACAGCCACGGCGTCCTCCACCGCGACCTCAAGCCCCAGAACCTTCTTCTTGACCAGCACAAGGGTATTCTCAAGATCGCCGATCTCGGCCTCGGTCGCGCCTTCACTGTCCCTCTCAAGAGCTACACTCACGAGATCGTTACTCTCTGGTACAGAGCGCCCGAGGTCCTCCTTGGCTCTACCCATTACTCCACTGGGGTTGATATCTGGTCCGTTGGCTGCATCTTTGCTGAAATGGTGAGAAGGCAAGCGCTGTTTCCGGGGGATTCTGAGTTCCAGCAGCTCATTCACATATTCAAGATGTTGGGGACTCCAACGGAGGAGCAATGGCCGGGAGTTACTTCTCTGCGTGATTGGCATGTTTACCCGCGGTGGGAACCTCAGAGCTTGGCAAGGAATGTGCCCTCCTTAGGACCTGATGGAGTGGACCTTCTCTCGAAAATGCTCAAATATAATCCTTCTGAGAGAATATCTGCCAAGGCAGCACTTGATCATCCCTACTTTGACAGTCTTGACAAGTCTCAATTTTAG 945 0.5577 MEKYEKLEKVGEGTYGKVYKAREKASGKVVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYIVRLLSVEHVDKVPKAQAASANPHTKPILYLVFEYLDTDLKKFIDSHRKGPNPRPLPASLVRSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQHKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDIWSVGCIFAEMVRRQALFPGDSEFQQLIHIFKMLGTPTEEQWPGVTSLRDWHVYPRWEPQSLARNVPSLGPDGVDLLSKMLKYNPSERISAKAALDHPYFDSLDKSQF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3529 314 Gene3D Transferase(Phosphotransferase) domain 1 101 313 - -
Ssu4g3529 314 Pfam Protein kinase domain 4 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3529 314 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Ssu4g3529 314 PANTHER CELL DIVISION PROTEIN KINASE 1 314 - -
Ssu4g3529 314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Ssu4g3529 314 ProSiteProfiles Protein kinase domain profile. 4 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3529 314 SMART serkin_6 4 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3529 314 SUPERFAMILY Protein kinase-like (PK-like) 1 309 IPR011009 -
Ssu4g3529 314 Gene3D Phosphorylase Kinase; domain 1 1 100 - -
Ssu4g3529 314 PANTHER CYCLIN-DEPENDENT KINASE B1-2 1 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3529 Ssu-Chr4 86293413 86295938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3529 1 314 Core Cell Cycle Gene Families AT3G54180 81.529 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Ssu4g3529 Pkinase 1.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3529 K07760 - gmx:100805119 605.52