Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3525 ATGGAAGCAAAATTAGTTGTAGAAGAAACTGGAGACAGGGAGGCAGGCTCCGCTCTTCTCCAGAAGTCTCTGGTTGGTCCTGACTCACTGGTGAAGTTTCAAGGAGCAGCCTCTTCCACTTGTAGTCTTGTCTCGACTTTTCTTGACCCTTCCCTGAAGGATATCAGCACCAGCGCGAGAGCTCTTAGGAGATTGAGAACCGCATGTGAGAGAGCTAAGAGGACACTCTCCTCCACCACCCAGACAGCCATCGAGATTGACTCTCTCTACGAAGGTATCGACTTCTATTCCACCATCACCAGAGCAAGGTTCGAGGAACTCAACATGGACTTGTTCCGCAAGTGCACGGAACCCGTGGAGAAGTGCTTAAGGGACTCCAAAATCGACAAGAGTCGTGTTCACGATGTTGTCCTTGTTGGTGGATCCACCAGGATTCCCAAAGTGCAGCAGTTATTGCAGGACTTGTTCAACGGGCAAGAGCTTTGCAAGAGCATTAACCCTGACGAGGCCGTTGCCTACGGAGCTGCGGTGCAGGCTGCTATTTTGAGCGGTGAAGGGAACGAGAAGGTTCAGGATTTGCTTCTGCTTGATGTCACTCCCCTCAGTTTGGGTATTGAAACCGCAGGGGGTGTGATGACAGTGCTGATTCCGAGGAACACAACAATTCCCACCAAGAAGGAGCAGATCTTCTCTACTTACGCTGACAACCAACCCGGGGTGCTAATTCAGGTGTATGAGGGCGAGAGAGCGAGGACCAAAGACAACAATCTCCTGGGGAAGTTTGAACTCACTGGCATCCCTCCGGCGCCAAGAGGGGTTCCTCAAATCAATGTGTGCTTCGACATTGACGCGAACGGGATTTTGAATGTTTCGGCGGAGGACAAGACTGCGGGGGTGAAGAACAAGATCACGATCACGAATGATAAGGGAAGGCTGAGCAAGGAGGAGATTGAGAGGCTGGTGCAGGAGGCGGAGAGATACAAGGCGGAGGATGAGGAGGTGAAGAAGAAGGTGGAGGCCAAGAACTCGCTGGAGAACTATGCCTACAACATGAGGAATACGGTGAGGGATGACAAGTTTGCACGGAAACTGAACCCTGCGGATAAGCAGAAGATTGAGAAGGCGGTTGATGAGACCGTTGAGTGGCTTGACAGGAACCAGCTGGCGGAGGTGGAGGAATTTGAGGACAAATTGAAGGAGTTGGAGGGACTGTGCAACCCAATTATCGCCAATATGTACCAAGGGGGTGCTGGGGATGTGCCCATGGGTGGTGCAGATGACGCCCCTAATGGTGGCTATGGAAAATCATCCACCGGTGGCGCTGGTGCCGGGCCTAAGATCGAAGAAGTTGACTAA 1356 0.5206 MEAKLVVEETGDREAGSALLQKSLVGPDSLVKFQGAASSTCSLVSTFLDPSLKDISTSARALRRLRTACERAKRTLSSTTQTAIEIDSLYEGIDFYSTITRARFEELNMDLFRKCTEPVEKCLRDSKIDKSRVHDVVLVGGSTRIPKVQQLLQDLFNGQELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGIETAGGVMTVLIPRNTTIPTKKEQIFSTYADNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIERLVQEAERYKAEDEEVKKKVEAKNSLENYAYNMRNTVRDDKFARKLNPADKQKIEKAVDETVEWLDRNQLAEVEEFEDKLKELEGLCNPIIANMYQGGAGDVPMGGADDAPNGGYGKSSTGGAGAGPKIEEVD 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3525 451 Gene3D - 341 415 IPR029048 -
Ssu4g3525 451 Gene3D - 115 162 - -
Ssu4g3525 451 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 44 425 - -
Ssu4g3525 451 MobiDBLite consensus disorder prediction 418 451 - -
Ssu4g3525 451 PANTHER HEAT SHOCK PROTEIN 70KDA 44 425 IPR013126 GO:0005524|GO:0140662
Ssu4g3525 451 PRINTS 70kDa heat shock protein signature 165 185 - -
Ssu4g3525 451 PRINTS 70kDa heat shock protein signature 192 211 - -
Ssu4g3525 451 PRINTS 70kDa heat shock protein signature 133 149 - -
Ssu4g3525 451 PRINTS 70kDa heat shock protein signature 273 289 - -
Ssu4g3525 451 Pfam Hsp70 protein 44 414 IPR013126 GO:0005524|GO:0140662
Ssu4g3525 451 Gene3D Actin; Chain A, domain 4 52 114 - -
Ssu4g3525 451 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 187 340 IPR029047 -
Ssu4g3525 451 Gene3D - 163 180 - -
Ssu4g3525 451 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 188 345 IPR029047 -
Ssu4g3525 451 SUPERFAMILY Actin-like ATPase domain 53 184 IPR043129 -
Ssu4g3525 451 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 339 418 IPR029048 -
Ssu4g3525 451 Coils Coil 384 404 - -
Ssu4g3525 451 ProSitePatterns Heat shock hsp70 proteins family signature 3. 136 150 IPR018181 -
Ssu4g3525 451 Coils Coil 310 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3525 Ssu-Chr4 86261612 86269479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3525 42 451 Calmodulin-binding Proteins AT1G16030 79.612 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3525 K03283 - egr:104450645 691.804