Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3523 ATGATCATCAACGTGAAAGAATCGACGATGGTGCGGCCGGCGGAGGAGGTGGCGCGTCGGGTGGTGTGGAACTCGAACGTGGACCTGGTGGTGCCCAATTTCCACACGCCAAGCGTGTACTTCTATAGGGCCAACGGCGCCTGCAATTTTTTCGATTGTAAGGTTTTGAAGGAGGCTTTAAGCAAGGTACTGGTCCCGTTCTACCCAATGGCTGGGCGGCTCCGGCGAGACGAAGACGGTCGCGTGGAGATTGATTGCGACGGTCAAGGGGTGCTGTTCGTGGAGGCCGACACCGGCGCCGTCATCGACGATTTTGGCGACTTCGCACCCACGCTTGAGCTCCGCCAGCTTATCCCCGCCGTCGATTATTCGCAGGGAATCGAAACGTATCCCTTGTTGGTGTTACAGGTAACACATTTTAAATGTGGAGGGGTGTCGCTGGGTGTTGGTATGCAACATCATGTAGCAGATGGAGCCTCTGGTCTTCACTTTATCAATACATGGTCGGATGTGGGTCGTGGCCTGGATGTTGCCATTCCACCGTTCATTGACCGGACAATACTTCGTGCCCGAGATCCACCTCGACCTGTTTTTGAGCACATTGAATACAGTCCCCCACCAGCCATGAAGACTCCACAGCCCGCTAAACCAGACTCAGATTGTGCAGCGGTCTCTATTTTCAAACTCACACGTGACCAGCTCAACAAGCTGAAAGCCAAGTCCAAAGAATATGGCAACACAATCAACTACAGCTCTTACGAGATGTTGGCAGGTCACGTGTGGAGAAGTGTATGCAAGGCAAGAGCACTTCCTGACGATCAAGAGACCAAATTGTACATTGCAACTGATGGACGGTCAAGATTGCAACCTTCTCCCCCACGGGGTTACTTTGGCAATGTGATATTCACAACCACACCTACAGCTGTGGCAGGTGATCTCATGTCTAAACCAACATGGTATGCTGCGAGCAGAATCCATAATGCATTGGTTCGAATGGACAACGAATATTTGAGATCGGCTCTTGATTATCTAGAGCTGCAACCTGACCTGAAAGCTCTTGTTCGTGGGGCCCATACTTTCAAGTGTCCAAATCTTGGCATCACTAGCTGGACTAGGCTCCCGATCCATGATGCTGACTTCGGTTGGGGAAGGCCCATATTCATGGGACCTGGTGGAATTGCATACGAGGGGCTATCTttcataattccaagctcaacgAATGATGGGAGCTTATCTGTGGCAATAGCTCTTCAGCCCGAGCATATGAAGGTGTTTGAAGAATTCTTGTATGACATTTGA 1299 0.5019 MIINVKESTMVRPAEEVARRVVWNSNVDLVVPNFHTPSVYFYRANGACNFFDCKVLKEALSKVLVPFYPMAGRLRRDEDGRVEIDCDGQGVLFVEADTGAVIDDFGDFAPTLELRQLIPAVDYSQGIETYPLLVLQVTHFKCGGVSLGVGMQHHVADGASGLHFINTWSDVGRGLDVAIPPFIDRTILRARDPPRPVFEHIEYSPPPAMKTPQPAKPDSDCAAVSIFKLTRDQLNKLKAKSKEYGNTINYSSYEMLAGHVWRSVCKARALPDDQETKLYIATDGRSRLQPSPPRGYFGNVIFTTTPTAVAGDLMSKPTWYAASRIHNALVRMDNEYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWTRLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSSTNDGSLSVAIALQPEHMKVFEEFLYDI 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3523 432 Gene3D - 1 205 IPR023213 -
Ssu4g3523 432 PANTHER SHIKIMATE/QUINATE HYDROXYCINNAMOYLTRANSFERASE 4 431 - -
Ssu4g3523 432 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 431 - -
Ssu4g3523 432 Gene3D - 214 432 IPR023213 -
Ssu4g3523 432 Pfam Transferase family 3 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3523 Ssu-Chr4 86248484 86252661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3523 1 432 Monolignol Biosynthesis Gene Families AT5G48930 77.598 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3523 K13065 - gmx:100820075 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3523 4 86248484 86252661 Ssu4g3523 4 86248484 86252661 ECH
Ssu8g0046 8 800237 806767 Ssu4g3523 4 86248484 86252661 PCT