Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3522 ATGGGAATATACCTCAGCGCTCCGAAAACAGAAAAGGCCTCTGAAGATGGTGAGAACGACAAGCTTCGCTACGGTTTGTCTTCTATGCAGGGCTGGCGTGCTTCTATGGAAGATGCTCATGCAGCTCATCCATATTTGGACGAGTCTACATCTTACTTTGCCGTTTATGATGGCCATGGAGGCAAAGcagtttcaaaattttgtgccAAGTATCTACACCAGCAGGTACTTAAGAGTGAAGCTTACTTAGCTGGAGATTTAGGCACATCTTTACAGAAATCTTTCCTCAGAATGGATGAGATGATGCGTGGACAACGAGGGTGGAGAGAATTAGCAGTCTTGGGAGATAAAATGGACAAGTTGTCTGGTATGCTAGAGAGTTTTATATGGTCTCCCAAGTGTAGCGAAGCCAATGACCGTGTCAATGATTGGGCTTTTGAGGAGGGACCCCATTCTGATTTTAGTGGACCAAACTCTGGAAGCACAGCTTGTGTGGCTGTCATTCAAGGAAACAAACTTGTCGTTGCTAATGCTGGAGATTCTAGATGTGTGTTATCAAGGAAAGGCCAGGCACACAATTTGTCTAAAGATCACAAGCCTGACCTTGAGGCTGAGAAAGACAGGATTCTAAAAGCTGGTGGTTTCATCCAACATGGACGGGTCAATGGAAGTTTGAACTTGGCTAGAGCAATTGGAGATATGGAATTCAAGCAGAATAAGTATTTGCCTGCCGAAAAGCAGATTGTGAGTGCTGATCCGGACATTACTTCAGTTGAGCTTTGTGATGATGATGAGTTTCTTGTAATAGCTTGTGATGGAATATGGGATTGTATGTCTAGCCAACAGCTTGTGGACTTTATACATCAACAATTAAAGACAGAGAATAAACTTTCTGCGGTTTGTGAGAAAGTATTTGATAGGTGCTTGGCACCAACAACTGGTGGTGAGGGATGTGATAACATGACCATGATCTTGATTCAGTTCAAAAAACCTTCCAATCCAGATGATTCTGTCACGAACCAGAACCAGCCCCAATCGTCTGCCCAACCATCTGAAGCTGATAGAAGTTCAGAGAAAACAGAATTAAAGTGA 1092 0.4267 MGIYLSAPKTEKASEDGENDKLRYGLSSMQGWRASMEDAHAAHPYLDESTSYFAVYDGHGGKAVSKFCAKYLHQQVLKSEAYLAGDLGTSLQKSFLRMDEMMRGQRGWRELAVLGDKMDKLSGMLESFIWSPKCSEANDRVNDWAFEEGPHSDFSGPNSGSTACVAVIQGNKLVVANAGDSRCVLSRKGQAHNLSKDHKPDLEAEKDRILKAGGFIQHGRVNGSLNLARAIGDMEFKQNKYLPAEKQIVSADPDITSVELCDDDEFLVIACDGIWDCMSSQQLVDFIHQQLKTENKLSAVCEKVFDRCLAPTTGGEGCDNMTMILIQFKKPSNPDDSVTNQNQPQSSAQPSEADRSSEKTELK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3522 363 PANTHER PROTEIN PHOSPHATASE 2C 1 341 IPR015655 GO:0004722|GO:0006470
Ssu4g3522 363 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Ssu4g3522 363 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
Ssu4g3522 363 Gene3D - 1 329 IPR036457 -
Ssu4g3522 363 Pfam Protein phosphatase 2C 156 313 IPR001932 -
Ssu4g3522 363 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Ssu4g3522 363 SUPERFAMILY PP2C-like 3 330 IPR036457 -
Ssu4g3522 363 SMART PP2C_4 13 326 IPR001932 -
Ssu4g3522 363 CDD PP2Cc 23 328 IPR001932 -
Ssu4g3522 363 MobiDBLite consensus disorder prediction 332 353 - -
Ssu4g3522 363 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 341 - -
Ssu4g3522 363 MobiDBLite consensus disorder prediction 329 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3522 Ssu-Chr4 86211920 86217745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3522 1 337 PP2C-type Phosphatase Gene Family AT2G25070 73.977 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3522 K17499 - gmx:100776787 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3522 4 86211920 86217745 Ssu4g3522 4 86211920 86217745 ECH